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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00285

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00285

Identity

Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-48_75-89
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.56e-01 71.4% 97.3%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 41.0 2.87e-01 85.7% 79.8%
4lhpF00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 38.0 3.20e-01 87.3% 81.5%
8oh5B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.57e-01 92.1% 89.8%
1nt4A01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.50 42.0 2.93e-01 100.0% 84.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 2.88e-01 90.5% 59.6%
3311758 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.51 38.0 3.49e-01 85.7% 95.6%
D2 medium residues 49-74_90-188
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.50 36.0 3.40e-01 73.6% 78.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492352 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 37.0 4.05e-01 96.0% 82.9%
3353407 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.55 39.0 2.86e-01 74.4% 94.5%
4982145 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 34.0 3.52e-01 90.4% 70.0%
4122018 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.51 34.0 3.74e-01 93.6% 85.0%