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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00349

Bact-Vir

Filtrate_w_scaffold_3_prodigal-single.1__X__X__00349

Identity

Kingdom:
phage

Quality

60.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 179-221
PDB
D2 medium residues 241-270_339-439
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 26.0 3.48e-01 93.1% 71.0%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.58 26.0 3.33e-01 96.2% 71.1%
2br6A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 41.0 3.46e-01 77.1% 93.5%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 38.0 3.60e-01 89.3% 64.2%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.51 22.0 3.32e-01 71.0% 93.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.93 63.0 6.03e-01 70.2% 62.1%
3291398 378.1.1.20 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.91 77.0 6.79e-01 86.3% 100.0%
4992414 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.56 39.0 3.67e-01 93.1% 60.0%
4088578 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.53 25.0 3.47e-01 93.9% 90.8%
D3 medium residues 271-338
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.63 35.0 3.14e-01 89.7% 37.8%
1v1hA02 6.20.230.10 Special › Other non-globular › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 21.0 3.01e-01 85.3% 66.7%
3s6xC02 6.10.250.3380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 19.0 2.81e-01 85.3% 65.5%
2b7uA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.52 29.0 2.75e-01 100.0% 43.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3529052 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.63 34.0 4.08e-01 91.2% 80.0%
3575470 260.1.1.0 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat 0.59 41.0 3.06e-01 72.1% 38.2%
3927985 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.58 47.0 3.28e-01 91.2% 72.8%
3546235 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.57 28.0 3.36e-01 88.2% 68.9%
3490047 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 38.0 3.97e-01 92.6% 83.3%