←Back to structures
Filtrate_w_scaffold_3_prodigal-single.1__X__X__00447
Bact-VirFiltrate_w_scaffold_3_prodigal-single.1__X__X__00447
Identity
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 72-221
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.77 | 43.0 | 5.50e-01 | 78.0% | 92.1% |
| 6grqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 27.0 | 3.45e-01 | 71.3% | 64.8% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.56 | 45.0 | 4.27e-01 | 90.7% | 71.0% |
| 2vsdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.50e-01 | 70.7% | 84.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.84 | 45.0 | 5.99e-01 | 78.0% | 94.1% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.83 | 46.0 | 6.10e-01 | 79.3% | 97.6% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.82 | 46.0 | 5.97e-01 | 79.3% | 93.3% |
| 4457400 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.82 | 47.0 | 5.59e-01 | 80.0% | 81.0% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.82 | 46.0 | 5.93e-01 | 79.3% | 93.3% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 47.0 | 5.99e-01 | 80.7% | 96.7% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.80 | 45.0 | 5.72e-01 | 78.0% | 92.2% |
| 3588392 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.74 | 48.0 | 5.81e-01 | 86.0% | 98.0% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.74 | 42.0 | 5.39e-01 | 78.7% | 95.5% |
| 3505268 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.74 | 57.0 | 6.00e-01 | 79.3% | 88.9% |
| 4929079 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.65 | 41.0 | 5.09e-01 | 90.7% | 100.0% |
| 3838723 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 51.0 | 4.93e-01 | 85.3% | 100.0% |
| 403748 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 45.0 | 4.32e-01 | 90.7% | 73.5% |
| 4401093 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.50 | 33.0 | 3.39e-01 | 88.7% | 66.7% |
D2
medium
residues 1-53
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.65e-01 | 83.0% | 58.9% |