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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00453
Bact-VirFiltrate_w_scaffold_3_prodigal-single.1__X__X__00453
Identity
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-126_333-357
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dq3A02 | 3.30.160.90 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 25.0 | 3.45e-01 | 75.5% | 85.5% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.55 | 32.0 | 3.95e-01 | 76.2% | 96.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992099 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.76 | 35.0 | 4.97e-01 | 72.2% | 89.3% |
| 5076212 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 45.0 | 4.96e-01 | 70.2% | 84.0% |
| 5053109 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 36.0 | 3.75e-01 | 86.8% | 65.5% |
D2
medium
residues 127-332
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.74 | 30.0 | 4.11e-01 | 97.6% | 70.9% |
| 4gicA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.67 | 33.0 | 3.91e-01 | 87.4% | 66.7% |
| 4d02A02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.63 | 38.0 | 4.46e-01 | 99.0% | 83.9% |
| 2ziuB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 37.0 | 4.23e-01 | 96.1% | 77.2% |
| 1flaA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.63 | 37.0 | 4.41e-01 | 98.5% | 85.5% |
| 1yt8A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.59 | 29.0 | 3.86e-01 | 87.9% | 87.0% |
| 3ct6A00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.58 | 27.0 | 3.27e-01 | 95.1% | 64.6% |
| 3b1fA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 37.0 | 4.01e-01 | 97.6% | 74.9% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 35.0 | 4.19e-01 | 94.2% | 92.7% |
| 1npdB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 33.0 | 3.89e-01 | 91.7% | 82.6% |
| 4uulA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 37.0 | 4.19e-01 | 93.2% | 94.1% |
| 2csuA02 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.53 | 33.0 | 4.00e-01 | 94.7% | 92.2% |
| 3dnfA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.52 | 26.0 | 3.62e-01 | 88.8% | 99.0% |
| 4pioA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 4.39e-01 | 98.1% | 95.0% |
| 2x5nA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 39.0 | 4.17e-01 | 99.0% | 91.1% |
| 3evzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 4.15e-01 | 95.6% | 94.6% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 33.0 | 3.61e-01 | 97.1% | 78.7% |
| 3rc3A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 34.0 | 3.82e-01 | 96.6% | 87.4% |
| 5jnmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 3.96e-01 | 99.0% | 80.3% |
| 3grzB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 36.0 | 3.74e-01 | 94.7% | 77.2% |
| 3tmaA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 38.0 | 4.03e-01 | 96.1% | 89.8% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 3.74e-01 | 98.5% | 69.7% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 35.0 | 3.89e-01 | 94.2% | 89.1% |
| 1t35E00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 38.0 | 4.00e-01 | 96.6% | 87.4% |
| 1y8cA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 4.15e-01 | 98.5% | 90.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4771626 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.74 | 30.0 | 4.11e-01 | 97.6% | 70.9% |
| 3285731 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 44.0 | 5.14e-01 | 98.1% | 84.8% |
| 4972924 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.71 | 41.0 | 5.28e-01 | 96.1% | 100.0% |
| 4973776 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.68 | 44.0 | 5.14e-01 | 98.5% | 90.0% |
| 4257099 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.60 | 31.0 | 4.02e-01 | 95.1% | 88.2% |
| 4965794 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.58 | 30.0 | 3.51e-01 | 95.1% | 69.0% |
| 3592709 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.57 | 37.0 | 4.02e-01 | 97.1% | 76.0% |
| 3708172 | 2003.1.1.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_2 | 0.57 | 37.0 | 3.96e-01 | 97.1% | 73.9% |
| 3731717 | 2008.3.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N | 0.54 | 40.0 | 4.50e-01 | 98.5% | 100.0% |
| 4209848 | 2004.1.1.108 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SulA | 0.54 | 31.0 | 3.57e-01 | 96.1% | 76.0% |
| 3947532 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 29.0 | 3.66e-01 | 94.2% | 90.8% |
| 3839283 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.52 | 37.0 | 3.84e-01 | 95.6% | 75.5% |
| 3594188 | 2008.3.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N | 0.52 | 39.0 | 4.35e-01 | 98.5% | 100.0% |
| 3289583 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 28.0 | 3.72e-01 | 87.4% | 100.0% |
| 4027084 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.51 | 39.0 | 4.17e-01 | 99.0% | 89.7% |
| 4626950 | 2003.1.5.40 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TrmK | 0.50 | 35.0 | 3.85e-01 | 94.7% | 86.5% |