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Filtrate_w_scaffold_3_prodigal-single.1__X__X__00458
Bact-VirFiltrate_w_scaffold_3_prodigal-single.1__X__X__00458
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-118
Domain cluster:
rep: BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00169__D1-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 32.7 | 1.00e-07 | 77.1% | 94.9% |
D2
medium
residues 137-188
Domain cluster:
rep: AY682195.1__AAV35876.1__orf56__00056__D75-123
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 71.0 | 6.46e-01 | 100.0% | 70.6% |
| 2ff4A03 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.65 | 56.0 | 4.60e-01 | 100.0% | 92.9% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 45.0 | 4.70e-01 | 75.0% | 100.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 39.0 | 3.78e-01 | 100.0% | 59.0% |
| 4d7kA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.53e-01 | 96.2% | 42.7% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.93e-01 | 98.1% | 59.4% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 50.0 | 4.97e-01 | 100.0% | 100.0% |
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 37.0 | 3.76e-01 | 98.1% | 66.7% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.21e-01 | 96.2% | 33.1% |
| 2g3mA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 33.0 | 2.98e-01 | 98.1% | 40.0% |
| 3a43B02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 36.0 | 4.22e-01 | 100.0% | 100.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.57 | 51.0 | 4.36e-01 | 100.0% | 68.3% |
| 2khoA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 41.0 | 3.02e-01 | 82.7% | 95.0% |
| 2l4mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 3.96e-01 | 96.2% | 65.2% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 33.0 | 3.45e-01 | 96.2% | 66.7% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.47e-01 | 90.4% | 75.2% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.19e-01 | 96.2% | 86.5% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.95e-01 | 96.2% | 70.5% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.44e-01 | 96.2% | 56.6% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.51 | 38.0 | 3.90e-01 | 82.7% | 90.0% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.64e-01 | 94.2% | 62.2% |
| 4qglA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 40.0 | 2.97e-01 | 100.0% | 73.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.85 | 78.0 | 7.76e-01 | 100.0% | 98.1% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.83 | 71.0 | 6.47e-01 | 100.0% | 71.0% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.83 | 70.0 | 7.11e-01 | 98.1% | 96.0% |
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.67 | 53.0 | 4.20e-01 | 88.5% | 77.1% |
| 3827287 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 40.0 | 3.97e-01 | 78.8% | 60.0% |
| 3514790 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.61 | 40.0 | 3.98e-01 | 96.2% | 60.0% |
| 5036380 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.59 | 49.0 | 4.10e-01 | 100.0% | 91.0% |
| 4965365 | 375.1.1.336 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7129 | 0.58 | 34.0 | 4.12e-01 | 96.2% | 100.0% |
| 4986404 | 4008.1.1.0 ↗ | 0.58 | 41.0 | 4.20e-01 | 92.3% | 80.0% | |
| 3226168 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.57 | 40.0 | 3.23e-01 | 100.0% | 38.0% |
| 3573611 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 33.0 | 4.13e-01 | 100.0% | 100.0% |
| 4099915 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.56 | 35.0 | 4.07e-01 | 94.2% | 94.3% |
| 4933882 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.56 | 45.0 | 3.78e-01 | 100.0% | 88.6% |
| 3719787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 40.0 | 4.38e-01 | 100.0% | 100.0% |
| 5058275 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.56 | 45.0 | 3.52e-01 | 100.0% | 72.6% |
| 4953482 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.55 | 44.0 | 3.57e-01 | 100.0% | 74.4% |
| 3481678 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.55 | 46.0 | 3.95e-01 | 96.2% | 60.0% |
| 3518250 | 822.2.1.0 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like | 0.55 | 34.0 | 3.69e-01 | 100.0% | 80.0% |
| 4600774 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 47.0 | 4.64e-01 | 100.0% | 98.2% |
| 4948028 | 284.1.1.32 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF | 0.55 | 44.0 | 3.69e-01 | 100.0% | 88.6% |
| 3223367 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 45.0 | 4.30e-01 | 100.0% | 92.3% |
| 3245932 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 38.0 | 4.05e-01 | 100.0% | 88.9% |
| 3983134 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.53 | 39.0 | 3.35e-01 | 84.6% | 58.0% |
| 2103395 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.53 | 40.0 | 3.60e-01 | 86.5% | 96.2% |
| 3414926 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.52 | 34.0 | 3.80e-01 | 100.0% | 100.0% |
| 4008034 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.52 | 39.0 | 2.85e-01 | 86.5% | 34.1% |
| 4268554 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.50 | 42.0 | 3.73e-01 | 100.0% | 76.2% |
D3
medium
residues 208-253
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hh2D03 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.68 | 44.0 | 4.73e-01 | 100.0% | 79.5% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.66 | 55.0 | 5.28e-01 | 100.0% | 100.0% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 49.0 | 4.74e-01 | 100.0% | 98.1% |
| 3u31A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.57 | 47.0 | 3.70e-01 | 100.0% | 43.4% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 39.0 | 4.29e-01 | 97.8% | 91.9% |
| 2c5wB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 49.0 | 2.85e-01 | 100.0% | 68.8% |
| 3c9aA01 | 2.20.20.160 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.54 | 47.0 | 4.00e-01 | 100.0% | 59.2% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 46.0 | 4.66e-01 | 97.8% | 97.8% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.53 | 41.0 | 4.05e-01 | 100.0% | 81.6% |
| 2b4yA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.53 | 46.0 | 3.53e-01 | 100.0% | 54.6% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 35.0 | 3.46e-01 | 95.7% | 66.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.82 | 74.0 | 7.02e-01 | 100.0% | 98.1% |
| 4583179 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 55.0 | 5.27e-01 | 100.0% | 100.0% |
| 3508327 | 5.1.4.265 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st | 0.57 | 40.0 | 2.37e-01 | 73.9% | 53.2% |
| 5057952 | 375.1.1.325 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC | 0.55 | 38.0 | 3.40e-01 | 100.0% | 52.3% |
| 4967657 | 375.1.1.325 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC | 0.54 | 38.0 | 3.92e-01 | 100.0% | 77.8% |
| 4325327 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 37.0 | 4.09e-01 | 100.0% | 97.1% |
| 3853799 | 386.1.1.290 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C | 0.52 | 38.0 | 3.27e-01 | 100.0% | 49.3% |
| 5061831 | 375.1.1.325 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC | 0.52 | 37.0 | 3.42e-01 | 100.0% | 58.3% |
| 5052386 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 39.0 | 4.15e-01 | 95.7% | 97.5% |
| 3860225 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.51 | 43.0 | 2.72e-01 | 100.0% | 23.1% |
| 4885815 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 43.0 | 4.07e-01 | 95.7% | 100.0% |
| 3966576 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.51 | 42.0 | 2.68e-01 | 97.8% | 17.4% |
| 5057902 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.51 | 43.0 | 2.71e-01 | 100.0% | 17.7% |
| 4617879 | 11.1.1.56 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_X2 | 0.51 | 39.0 | 3.21e-01 | 93.5% | 83.0% |