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Filtrate_w_scaffold_4_prodigal-single.1__X__X__00003
Bact-VirFiltrate_w_scaffold_4_prodigal-single.1__X__X__00003
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-65
Domain cluster:
representative
D2
medium
residues 143-234_257-282_317-330_342-373_401-419
Domain cluster:
rep: Filtrate_w_scaffold_4_prodigal-single.1__X__X__00002__D147-383
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bhgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 33.0 | 4.29e-01 | 89.1% | 98.0% |
| 4k17B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 33.0 | 4.04e-01 | 84.7% | 100.0% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 22.0 | 3.15e-01 | 74.9% | 81.5% |
| 1ltxR02 | 3.30.519.10 | Alpha Beta › 2-Layer Sandwich › Guanine Nucleotide Dissociation Inhibitor; domain 2 › Guanine Nucleotide Dissociation Inhibitor, domain 2 | 0.53 | 35.0 | 3.54e-01 | 86.9% | 66.9% |
| 4oycB00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.50 | 26.0 | 3.44e-01 | 92.3% | 97.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4484730 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.54 | 26.0 | 3.34e-01 | 90.7% | 80.0% |
| 5061259 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.53 | 24.0 | 3.11e-01 | 90.2% | 73.0% |
| 3830352 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.52 | 23.0 | 3.36e-01 | 85.8% | 90.6% |
| 4968392 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.51 | 24.0 | 3.04e-01 | 90.7% | 74.0% |
D3
medium
residues 235-256_283-316_331-341_374-400
Domain cluster:
rep: EU409559.1__ACB72565.1__X__00023__D314-335_359-378_398-474