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Filtrate_w_scaffold_4_prodigal-single.1__X__X__00007
Bact-VirFiltrate_w_scaffold_4_prodigal-single.1__X__X__00007
Identity
- Kingdom:
- phage
Quality
68.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-137
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ddlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 46.0 | 3.59e-01 | 90.3% | 90.1% |
| 4i5sA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 4.35e-01 | 83.2% | 88.8% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.55 | 25.0 | 3.58e-01 | 85.8% | 92.5% |
| 3a0rA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 4.25e-01 | 84.1% | 84.0% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 41.0 | 3.50e-01 | 81.4% | 91.6% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 43.0 | 3.63e-01 | 87.6% | 73.3% |
| 3k3dA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 3.93e-01 | 83.2% | 72.2% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.87e-01 | 71.7% | 86.9% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 45.0 | 3.43e-01 | 93.8% | 57.4% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.52 | 21.0 | 3.04e-01 | 100.0% | 81.1% |
| 5i0hA02 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 32.0 | 3.89e-01 | 92.9% | 100.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419015 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 26.0 | 3.70e-01 | 100.0% | 84.0% |
| None | — | 0.62 | 47.0 | 2.89e-01 | 81.4% | 69.1% | |
| 4026542 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.60 | 36.0 | 2.85e-01 | 92.0% | 27.6% |
| 5021930 | 4312.1.1.22 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › PF27370 | 0.55 | 44.0 | 4.62e-01 | 100.0% | 97.0% |
| 3301984 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 28.0 | 3.69e-01 | 98.2% | 98.2% |
| 3942222 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 40.0 | 4.02e-01 | 83.2% | 76.5% |
| 3415430 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 30.0 | 3.80e-01 | 98.2% | 93.8% |
| 3968876 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 38.0 | 3.99e-01 | 83.2% | 81.0% |
| 3762698 | 223.1.1.78 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC | 0.53 | 37.0 | 3.10e-01 | 71.7% | 74.0% |
| 3201205 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 41.0 | 3.14e-01 | 86.7% | 93.1% |
| 3872696 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.52 | 23.0 | 3.13e-01 | 100.0% | 91.1% |
| 3840771 | 3615.1.1.28 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › DUF7605 | 0.52 | 36.0 | 2.89e-01 | 72.6% | 95.9% |
| 3967650 | 101.1.2.378 ↗ | alpha arrays › HTH › HTH › winged helix domain › MksE | 0.52 | 35.0 | 3.48e-01 | 76.1% | 67.0% |
| 3964909 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 39.0 | 3.65e-01 | 85.8% | 94.0% |
| 4856794 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.50 | 27.0 | 3.14e-01 | 96.5% | 74.0% |