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Filtrate_w_scaffold_4_prodigal-single.1__X__X__00038
Bact-VirFiltrate_w_scaffold_4_prodigal-single.1__X__X__00038
Identity
- Kingdom:
- phage
Quality
42.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-49
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 55.0 | 3.86e-01 | 86.0% | 36.2% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 61.0 | 4.14e-01 | 95.3% | 36.3% |
| 2o5hA00 | 1.10.3510.10 | Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like | 0.69 | 56.0 | 4.17e-01 | 100.0% | 47.7% |
| 2kl0A00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.68 | 55.0 | 4.77e-01 | 100.0% | 56.2% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.68 | 49.0 | 5.13e-01 | 81.4% | 97.4% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 49.0 | 3.51e-01 | 86.0% | 36.9% |
| 6cngA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.65 | 47.0 | 4.81e-01 | 81.4% | 97.4% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.64 | 45.0 | 4.69e-01 | 81.4% | 97.4% |
| 2rczA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.60 | 48.0 | 4.47e-01 | 97.7% | 93.2% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 44.0 | 4.11e-01 | 86.0% | 63.2% |
| 1okgA03 | 3.30.1670.10 | Alpha Beta › 2-Layer Sandwich › 3-mercaptopyruvate sulfurtransferase, domain 3 › 3-mercaptopyruvate sulfurtransferase, domain 3 | 0.56 | 45.0 | 4.04e-01 | 100.0% | 82.6% |
| 4ggmX02 | 3.40.140.80 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain | 0.56 | 42.0 | 3.03e-01 | 88.4% | 97.3% |
| 2fcbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.73e-01 | 100.0% | 73.3% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.54 | 43.0 | 3.64e-01 | 100.0% | 51.7% |
| 4h7lB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.38e-01 | 100.0% | 48.7% |
| 2if6B00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 41.0 | 2.93e-01 | 100.0% | 40.0% |
| 5k6wA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.61e-01 | 100.0% | 57.0% |
| 3wo4C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.56e-01 | 100.0% | 54.9% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.52 | 40.0 | 2.78e-01 | 86.0% | 58.4% |
| 1uc8A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 41.0 | 3.89e-01 | 100.0% | 78.9% |
| 4x83A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.56e-01 | 100.0% | 74.1% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.50 | 37.0 | 2.95e-01 | 95.3% | 50.4% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 36.0 | 3.10e-01 | 83.7% | 87.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022012 | 101.1.2.491 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_BREX_BrxC | 0.69 | 56.0 | 4.63e-01 | 100.0% | 48.9% |
| 2914 | 101.24.1.1 ↗ | alpha arrays › HTH › NMB0513-like › NMB0513-like › DUF596 | 0.69 | 56.0 | 4.20e-01 | 100.0% | 48.8% |
| 3699220 | 284.1.1.6 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › DUF1930 | 0.64 | 52.0 | 4.56e-01 | 97.7% | 80.0% |
| 3620810 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 54.0 | 4.54e-01 | 97.7% | 64.0% |
| 3254182 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.63 | 53.0 | 4.53e-01 | 100.0% | 78.7% |
| 3927596 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.63 | 54.0 | 4.23e-01 | 100.0% | 65.3% |
| 4981878 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 53.0 | 4.60e-01 | 100.0% | 90.0% |
| 5072917 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.59 | 50.0 | 4.35e-01 | 100.0% | 79.7% |
| 3649381 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 50.0 | 4.78e-01 | 97.7% | 92.0% |
| 4012154 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 46.0 | 3.92e-01 | 100.0% | 68.2% |
| 3700912 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.57 | 42.0 | 3.85e-01 | 86.0% | 63.1% |
| 5051022 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 49.0 | 4.24e-01 | 100.0% | 68.6% |
| 3945048 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.57 | 46.0 | 3.88e-01 | 100.0% | 52.9% |
| 4864462 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 48.0 | 3.66e-01 | 97.7% | 50.0% |
| 3536989 | 386.1.1.333 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_5th | 0.55 | 38.0 | 4.00e-01 | 76.7% | 100.0% |
| 3890045 | 904.1.1.3 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX | 0.54 | 38.0 | 3.83e-01 | 88.4% | 75.6% |
| 4978068 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.53 | 36.0 | 3.25e-01 | 79.1% | 92.0% |
| 4971063 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 41.0 | 3.21e-01 | 93.0% | 86.7% |
| 3243431 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.52 | 38.0 | 2.70e-01 | 88.4% | 23.1% |
| 4960622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.06e-01 | 83.7% | 57.9% |
| 3844373 | 101.1.2.7 ↗ | alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind | 0.50 | 39.0 | 2.96e-01 | 88.4% | 61.7% |
D2
medium
residues 56-145