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Filtrate_w_scaffold_4_prodigal-single.1__X__X__00071
Bact-VirFiltrate_w_scaffold_4_prodigal-single.1__X__X__00071
Identity
- Kingdom:
- phage
Quality
63.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-64
Domain cluster:
rep: pre4_saliva_scaffold_3_prodigal-single.1__X__X__00105__D2-55
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.63 | 46.0 | 4.88e-01 | 84.2% | 100.0% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 50.0 | 4.36e-01 | 94.7% | 86.7% |
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 45.0 | 3.92e-01 | 87.7% | 81.6% |
| 1oqkA00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.59 | 50.0 | 4.58e-01 | 100.0% | 78.2% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 41.0 | 3.96e-01 | 78.9% | 100.0% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 43.0 | 3.66e-01 | 87.7% | 68.2% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.58 | 48.0 | 3.72e-01 | 96.5% | 43.1% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.57 | 46.0 | 3.37e-01 | 94.7% | 49.4% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 39.0 | 3.43e-01 | 75.4% | 80.9% |
| 4ig1A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.55 | 44.0 | 2.81e-01 | 100.0% | 16.8% |
| 4a8jB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 3.10e-01 | 98.2% | 76.8% |
| 4wwtA01 | 3.30.190.20 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain | 0.53 | 42.0 | 3.73e-01 | 98.2% | 82.2% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 42.0 | 3.99e-01 | 100.0% | 72.2% |
| 5f7cA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 36.0 | 3.81e-01 | 73.7% | 85.7% |
| 6fgcA02 | 3.90.105.10 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 | 0.52 | 38.0 | 3.86e-01 | 86.0% | 82.8% |
| 4pe5B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 41.0 | 3.07e-01 | 93.0% | 73.5% |
| 3ufiA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.46e-01 | 100.0% | 70.4% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 35.0 | 2.43e-01 | 70.2% | 90.4% |
| 3q48A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.76e-01 | 100.0% | 63.9% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.51 | 38.0 | 3.11e-01 | 87.7% | 98.4% |
| 2z0uA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 45.0 | 3.48e-01 | 100.0% | 53.9% |
| 3fcgB00 | 2.60.40.3110 | Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein | 0.51 | 38.0 | 3.63e-01 | 100.0% | 67.6% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 45.0 | 3.80e-01 | 100.0% | 64.2% |
| 1n0eA00 | 3.40.1550.20 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › Transcriptional regulator MraZ domain | 0.50 | 42.0 | 3.20e-01 | 94.7% | 47.5% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.73 | 56.0 | 5.92e-01 | 86.0% | 100.0% |
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.69 | 49.0 | 5.24e-01 | 80.7% | 97.8% |
| 3742088 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.68 | 53.0 | 5.42e-01 | 84.2% | 90.7% |
| 5015232 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 53.0 | 5.43e-01 | 89.5% | 90.9% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.67 | 48.0 | 5.24e-01 | 75.4% | 100.0% |
| 4007701 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.67 | 52.0 | 3.11e-01 | 87.7% | 16.7% |
| 4994655 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.67 | 50.0 | 5.24e-01 | 84.2% | 98.0% |
| 4629403 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.66 | 53.0 | 4.51e-01 | 87.7% | 79.8% |
| 3691283 | 4076.3.1.9 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C | 0.66 | 50.0 | 5.27e-01 | 86.0% | 96.0% |
| 4983060 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 51.0 | 4.61e-01 | 89.5% | 61.3% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 51.0 | 5.35e-01 | 87.7% | 100.0% |
| 4993371 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 49.0 | 5.11e-01 | 87.7% | 96.0% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 49.0 | 5.15e-01 | 93.0% | 100.0% |
| 4396206 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.64 | 49.0 | 4.86e-01 | 100.0% | 83.3% |
| 3716713 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 48.0 | 5.03e-01 | 84.2% | 96.0% |
| 5024995 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 49.0 | 5.02e-01 | 87.7% | 92.5% |
| 4280403 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.63 | 45.0 | 4.76e-01 | 78.9% | 97.8% |
| 4939553 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.63 | 47.0 | 4.89e-01 | 82.5% | 94.0% |
| 5036149 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 45.0 | 4.85e-01 | 82.5% | 100.0% |
| 5009 | 4076.3.1.2 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF | 0.62 | 47.0 | 4.96e-01 | 87.7% | 100.0% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.62 | 45.0 | 4.84e-01 | 78.9% | 100.0% |
| 5036241 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.62 | 47.0 | 4.54e-01 | 84.2% | 73.8% |
| 4951587 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.61 | 45.0 | 4.67e-01 | 86.0% | 92.0% |
| 5000438 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.61 | 45.0 | 4.29e-01 | 86.0% | 67.1% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 44.0 | 4.80e-01 | 82.5% | 100.0% |
| 5270 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.61 | 47.0 | 4.10e-01 | 87.7% | 83.2% |
| 4007792 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.61 | 50.0 | 3.94e-01 | 98.2% | 68.9% |
| 4641420 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.61 | 47.0 | 4.11e-01 | 86.0% | 54.4% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 43.0 | 4.57e-01 | 84.2% | 100.0% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.61 | 45.0 | 4.75e-01 | 84.2% | 97.9% |
| 4536596 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.60 | 44.0 | 4.59e-01 | 84.2% | 95.8% |
| 4593896 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.60 | 43.0 | 4.62e-01 | 77.2% | 97.8% |
| 1346119 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.60 | 44.0 | 4.62e-01 | 86.0% | 94.1% |
| 5010676 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.60 | 45.0 | 4.67e-01 | 86.0% | 96.0% |
| 3927505 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.59 | 49.0 | 4.49e-01 | 100.0% | 100.0% |
| 4666632 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 46.0 | 3.94e-01 | 89.5% | 91.0% |
| 4390215 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.59 | 47.0 | 4.41e-01 | 100.0% | 72.0% |
| 3920703 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.58 | 51.0 | 3.18e-01 | 100.0% | 24.7% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.57 | 40.0 | 4.28e-01 | 77.2% | 100.0% |
| 3923675 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.57 | 46.0 | 4.45e-01 | 93.0% | 96.9% |
| 7175 | 862.1.1.2 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 | 0.57 | 46.0 | 3.37e-01 | 94.7% | 49.4% |
| 3968472 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 42.0 | 3.09e-01 | 84.2% | 62.3% |
| 2797958 | 230.4.1.1 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE | 0.56 | 45.0 | 3.60e-01 | 100.0% | 42.0% |
| 3197136 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 31.0 | 3.12e-01 | 75.4% | 53.3% |
| 4630278 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.54 | 42.0 | 4.01e-01 | 93.0% | 72.9% |
| 3616199 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.54 | 43.0 | 2.89e-01 | 93.0% | 55.4% |
| 4938054 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 39.0 | 3.62e-01 | 87.7% | 92.5% |
| 3404658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.94e-01 | 100.0% | 80.0% |
| 5072308 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.51 | 40.0 | 2.43e-01 | 86.0% | 79.3% |
| 3477856 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 39.0 | 3.17e-01 | 98.2% | 40.8% |
| 1086826 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.50 | 35.0 | 3.38e-01 | 75.4% | 62.7% |
| 3397222 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 3.61e-01 | 100.0% | 60.0% |