←Back to structures

Filtrate_w_scaffold_6_prodigal-single.1__X__X__00003

Bact-Vir

Filtrate_w_scaffold_6_prodigal-single.1__X__X__00003

Identity

Kingdom:
phage

Quality

65.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-93
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.64 40.0 4.80e-01 71.6% 100.0%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.59 50.0 3.90e-01 97.3% 56.8%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 40.0 3.61e-01 71.6% 55.0%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 4.15e-01 94.6% 71.7%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.55 37.0 3.27e-01 70.3% 82.8%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 36.0 3.24e-01 71.6% 46.8%
1qwyA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 37.0 2.91e-01 73.0% 76.7%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 45.0 3.20e-01 98.6% 50.8%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 3.12e-01 98.6% 43.3%
6wy9B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.53 38.0 3.52e-01 75.7% 98.9%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.53 43.0 3.29e-01 91.9% 74.7%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 3.09e-01 100.0% 47.2%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.53 43.0 3.33e-01 93.2% 59.8%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 39.0 3.67e-01 86.5% 63.2%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 3.84e-01 90.5% 68.4%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 44.0 3.41e-01 97.3% 74.9%
2h5eA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.32e-01 100.0% 57.8%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.50 37.0 3.27e-01 79.7% 77.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2088430 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.61 41.0 4.42e-01 75.7% 85.2%
4016853 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.04e-01 71.6% 98.9%
3671845 5.1.3.152 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N 0.56 49.0 3.04e-01 100.0% 48.1%
3875076 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 46.0 3.73e-01 94.6% 52.4%
3671149 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 3.03e-01 100.0% 43.0%
3992660 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 44.0 3.98e-01 94.6% 70.9%
4266767 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.54 41.0 4.24e-01 85.1% 100.0%
4351693 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.53 38.0 3.42e-01 78.4% 82.6%
5034546 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 39.0 3.51e-01 78.4% 58.1%
4997753 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.53 45.0 2.92e-01 100.0% 33.9%
3588618 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.53 44.0 3.56e-01 94.6% 65.3%
3994978 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.53 46.0 3.14e-01 98.6% 52.4%
162286 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 42.0 3.68e-01 94.6% 63.2%
4656410 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.52 40.0 3.88e-01 90.5% 73.0%
4344652 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.52 42.0 3.71e-01 91.9% 74.8%
3791940 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.27e-01 73.0% 97.0%
3255612 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.51 43.0 2.88e-01 100.0% 49.0%
3416404 5.1.4.240 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP 0.50 43.0 2.83e-01 100.0% 41.9%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 41.0 3.44e-01 94.6% 57.1%