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Filtrate_w_scaffold_6_prodigal-single.1__X__X__00093

Bact-Vir

Filtrate_w_scaffold_6_prodigal-single.1__X__X__00093

Identity

Kingdom:
phage

Quality

73.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-111
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 32.0 3.26e-01 72.5% 50.9%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 28.0 3.79e-01 75.2% 91.1%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 31.0 3.88e-01 73.4% 90.9%
1h8eH00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.52 32.0 3.52e-01 78.0% 76.4%
3eyyA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.50 21.0 2.81e-01 76.1% 74.5%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 30.0 3.55e-01 70.6% 91.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938379 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 34.0 4.31e-01 73.4% 76.9%
3846283 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 32.0 4.59e-01 85.3% 100.0%
3652684 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.65 42.0 4.93e-01 90.8% 96.0%
3491906 376.1.1.66 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 0.62 42.0 4.90e-01 70.6% 100.0%
3472116 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.62 27.0 4.10e-01 78.9% 100.0%
3667602 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 38.0 4.62e-01 79.8% 97.1%
3207641 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 38.0 4.24e-01 81.7% 84.7%
3339917 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 39.0 4.36e-01 83.5% 100.0%
4499359 4139.1.1.0 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like 0.54 29.0 3.52e-01 71.6% 80.0%
3705846 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 38.0 3.92e-01 72.5% 92.4%
3502902 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 39.0 4.05e-01 84.4% 80.0%
3719671 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 42.0 4.03e-01 81.7% 71.2%
3607436 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.53 37.0 3.90e-01 72.5% 100.0%
3211768 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 37.0 3.75e-01 89.9% 76.2%
1734768 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.52 29.0 3.65e-01 89.0% 100.0%
4028414 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 39.0 3.74e-01 80.7% 88.7%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 30.0 3.80e-01 71.6% 100.0%
3872000 109.4.1.872 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd 0.51 38.0 2.30e-01 81.7% 18.6%