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Filtrate_w_scaffold_6_prodigal-single.1__X__X__00147
Bact-VirFiltrate_w_scaffold_6_prodigal-single.1__X__X__00147
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-90
Domain cluster:
rep: gwf2_scaffold_96_prodigal-single.1__X__X__00089__D2-85
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.81 | 73.0 | 7.30e-01 | 100.0% | 95.6% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 50.0 | 4.16e-01 | 76.4% | 41.0% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.71 | 49.0 | 3.76e-01 | 71.9% | 86.3% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.69 | 41.0 | 3.79e-01 | 100.0% | 46.9% |
| 2z0qA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.68 | 47.0 | 3.68e-01 | 71.9% | 79.8% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.67 | 42.0 | 4.30e-01 | 82.0% | 64.4% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 45.0 | 4.64e-01 | 77.5% | 78.8% |
| 4r8zA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.62 | 53.0 | 4.00e-01 | 94.4% | 48.6% |
| 7k3zG01 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.62 | 56.0 | 4.21e-01 | 100.0% | 78.9% |
| 5c8gB00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 55.0 | 5.01e-01 | 100.0% | 80.3% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 53.0 | 4.23e-01 | 100.0% | 93.4% |
| 4dkcB00 | 1.20.1250.80 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 | 0.60 | 55.0 | 4.48e-01 | 100.0% | 60.0% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 55.0 | 4.73e-01 | 100.0% | 74.1% |
| 2r0yA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 52.0 | 4.89e-01 | 100.0% | 86.8% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 44.0 | 4.14e-01 | 77.5% | 72.0% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.59 | 54.0 | 4.10e-01 | 100.0% | 86.9% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.59 | 46.0 | 4.55e-01 | 82.0% | 87.0% |
| 3k2jA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 52.0 | 4.71e-01 | 100.0% | 81.0% |
| 4nswB01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.58 | 44.0 | 3.28e-01 | 84.3% | 69.1% |
| 1ezvC00 | 1.20.810.10 | Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C | 0.57 | 40.0 | 2.68e-01 | 74.2% | 74.8% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 37.0 | 2.95e-01 | 76.4% | 31.2% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 48.0 | 3.21e-01 | 95.5% | 53.9% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 46.0 | 4.27e-01 | 100.0% | 68.7% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 50.0 | 4.67e-01 | 100.0% | 80.2% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 50.0 | 3.79e-01 | 100.0% | 68.8% |
| 1foeA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 51.0 | 3.87e-01 | 100.0% | 73.5% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.54 | 40.0 | 4.02e-01 | 80.9% | 77.3% |
| 3mpxA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.54 | 49.0 | 3.74e-01 | 100.0% | 83.0% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 47.0 | 4.33e-01 | 100.0% | 82.5% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.54 | 47.0 | 4.59e-01 | 100.0% | 89.8% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.53 | 38.0 | 3.85e-01 | 76.4% | 77.8% |
| 3lk5A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 45.0 | 3.09e-01 | 96.6% | 48.9% |
| 2o8pA00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.52 | 46.0 | 3.37e-01 | 93.3% | 45.2% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 39.0 | 3.71e-01 | 79.8% | 76.4% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 42.0 | 4.15e-01 | 98.9% | 81.1% |
| 2xgjA04 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.50 | 33.0 | 2.96e-01 | 83.1% | 44.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4565383 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.88 | 40.0 | 5.33e-01 | 100.0% | 80.0% |
| 4579852 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.86 | 78.0 | 6.48e-01 | 100.0% | 59.3% |
| 3732769 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.84 | 76.0 | 6.19e-01 | 100.0% | 55.5% |
| 3960575 | 610.4.1.0 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain | 0.84 | 78.0 | 6.39e-01 | 100.0% | 58.7% |
| 2464385 | 192.27.1.0 ↗ | alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase | 0.73 | 46.0 | 5.38e-01 | 96.6% | 88.9% |
| 3510145 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.73 | 51.0 | 3.97e-01 | 71.9% | 88.9% |
| 3416161 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.71 | 49.0 | 3.71e-01 | 71.9% | 78.0% |
| 3235168 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.70 | 49.0 | 3.67e-01 | 71.9% | 84.2% |
| 3463676 | 109.4.1.1186 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6857 | 0.70 | 46.0 | 3.76e-01 | 77.5% | 38.1% |
| 3271067 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.69 | 48.0 | 3.57e-01 | 71.9% | 78.1% |
| 4958743 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 50.0 | 4.57e-01 | 76.4% | 69.6% |
| 4959990 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.67 | 50.0 | 4.31e-01 | 76.4% | 63.1% |
| 3796589 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.66 | 48.0 | 4.61e-01 | 80.9% | 67.0% |
| 4958744 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 48.0 | 4.43e-01 | 75.3% | 70.0% |
| 3472169 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.63 | 45.0 | 3.65e-01 | 74.2% | 41.9% |
| 3967617 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.61 | 55.0 | 4.45e-01 | 98.9% | 85.5% |
| 3357684 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.61 | 51.0 | 3.44e-01 | 93.3% | 90.8% |
| 3793387 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.60 | 55.0 | 3.88e-01 | 100.0% | 69.8% |
| 3800960 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.60 | 54.0 | 3.99e-01 | 100.0% | 78.7% |
| 3924651 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 43.0 | 4.24e-01 | 77.5% | 77.9% |
| 3742811 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.58 | 44.0 | 3.99e-01 | 78.7% | 60.9% |
| 3743879 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.58 | 44.0 | 4.34e-01 | 79.8% | 74.7% |
| 3578008 | 601.1.2.100 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF31009 | 0.58 | 50.0 | 4.26e-01 | 100.0% | 76.8% |
| 4459896 | 622.4.1.1 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 | 0.58 | 45.0 | 4.09e-01 | 80.9% | 72.8% |
| 4947400 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.57 | 41.0 | 3.57e-01 | 76.4% | 77.9% |
| 3673003 | 3922.1.1.254 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › NET2A_C | 0.56 | 43.0 | 3.81e-01 | 79.8% | 75.2% |
| 3329196 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.56 | 42.0 | 4.02e-01 | 78.7% | 69.0% |
| 3965450 | 150.1.1.18 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MafB | 0.55 | 48.0 | 4.31e-01 | 98.9% | 83.8% |
| 4977369 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.55 | 52.0 | 3.64e-01 | 100.0% | 55.6% |
| 3938057 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.54 | 50.0 | 3.85e-01 | 100.0% | 92.6% |
| 4970593 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.54 | 51.0 | 3.59e-01 | 100.0% | 54.4% |
| 3874130 | 133.1.1.5 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › DH_Alsin | 0.54 | 48.0 | 3.67e-01 | 98.9% | 68.1% |
| 3688463 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 43.0 | 3.24e-01 | 93.3% | 63.0% |
| 4108773 | 142.1.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 | 0.54 | 38.0 | 2.62e-01 | 85.4% | 20.3% |
| 4674738 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.54 | 48.0 | 3.61e-01 | 98.9% | 65.0% |
| 3569413 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.53 | 47.0 | 3.60e-01 | 100.0% | 60.5% |
| 3886417 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.53 | 47.0 | 3.65e-01 | 100.0% | 61.0% |
| 4019884 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.52 | 45.0 | 3.37e-01 | 100.0% | 55.4% |
| 4943739 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.52 | 47.0 | 4.17e-01 | 100.0% | 72.8% |
| 3230939 | 109.4.1.521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3 | 0.51 | 47.0 | 2.97e-01 | 100.0% | 20.9% |
| 3904779 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.51 | 43.0 | 4.04e-01 | 100.0% | 73.6% |
D2
high
residues 98-145
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.87 | 77.0 | 6.73e-01 | 100.0% | 79.2% |
| 4f0zB00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.84 | 60.0 | 4.07e-01 | 75.0% | 28.4% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.83 | 65.0 | 4.94e-01 | 100.0% | 37.6% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 67.0 | 6.71e-01 | 97.9% | 91.7% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 66.0 | 5.21e-01 | 100.0% | 44.1% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 61.0 | 6.13e-01 | 97.9% | 93.8% |
| 4iejA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 60.0 | 5.26e-01 | 100.0% | 58.7% |
| 1u78A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 56.0 | 5.80e-01 | 100.0% | 88.9% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.74 | 57.0 | 5.70e-01 | 95.8% | 84.0% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.73 | 63.0 | 5.34e-01 | 100.0% | 60.2% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 55.0 | 5.61e-01 | 97.9% | 95.6% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 58.0 | 4.63e-01 | 100.0% | 44.3% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.70 | 61.0 | 5.04e-01 | 100.0% | 72.7% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.69 | 58.0 | 4.74e-01 | 100.0% | 96.0% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 50.0 | 5.29e-01 | 100.0% | 92.7% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 53.0 | 4.87e-01 | 100.0% | 64.2% |
| 3wfwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 46.0 | 3.35e-01 | 70.8% | 26.1% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.68 | 46.0 | 4.05e-01 | 70.8% | 53.4% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 52.0 | 4.55e-01 | 95.8% | 56.4% |
| 3tuiD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 50.0 | 3.20e-01 | 81.2% | 16.8% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 5.33e-01 | 100.0% | 92.5% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.66 | 57.0 | 3.64e-01 | 100.0% | 24.6% |
| 1xriA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.65 | 53.0 | 3.90e-01 | 100.0% | 49.7% |
| 2f33A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 52.0 | 4.45e-01 | 100.0% | 73.6% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 55.0 | 3.91e-01 | 100.0% | 78.0% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.62 | 49.0 | 4.38e-01 | 93.8% | 77.3% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 50.0 | 4.39e-01 | 95.8% | 85.1% |
| 5jxxA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.59 | 47.0 | 4.42e-01 | 97.9% | 95.5% |
| 1vb3A01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.58 | 52.0 | 4.35e-01 | 100.0% | 81.5% |
| 2b4lA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.58 | 48.0 | 3.46e-01 | 100.0% | 51.6% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 45.0 | 4.14e-01 | 95.8% | 92.4% |
| 3n2oA04 | 1.10.287.3440 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 37.0 | 3.71e-01 | 70.8% | 67.3% |
| 3cnhB02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 43.0 | 4.07e-01 | 100.0% | 79.4% |
| 2eggB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.55 | 44.0 | 3.22e-01 | 95.8% | 88.7% |
| 3f2kB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 43.0 | 3.07e-01 | 100.0% | 25.1% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 37.0 | 3.61e-01 | 70.8% | 61.8% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.54 | 43.0 | 3.93e-01 | 100.0% | 75.3% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.54 | 43.0 | 3.29e-01 | 100.0% | 56.6% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 43.0 | 3.99e-01 | 100.0% | 70.0% |
| 2np5D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 3.22e-01 | 100.0% | 47.5% |
| 1hnnA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 42.0 | 2.75e-01 | 100.0% | 35.2% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.51 | 39.0 | 2.79e-01 | 100.0% | 36.7% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975642 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.91 | 82.0 | 5.45e-01 | 100.0% | 32.0% |
| 5064744 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.90 | 81.0 | 5.41e-01 | 100.0% | 32.9% |
| 5040600 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.89 | 80.0 | 5.40e-01 | 100.0% | 33.9% |
| 4938494 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.88 | 78.0 | 6.08e-01 | 100.0% | 56.0% |
| 4048642 | 101.1.1.304 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey | 0.87 | 78.0 | 7.13e-01 | 100.0% | 92.1% |
| 4493137 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.86 | 77.0 | 5.16e-01 | 100.0% | 33.7% |
| 4501343 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.86 | 75.0 | 7.19e-01 | 100.0% | 85.5% |
| 5028090 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.85 | 73.0 | 5.17e-01 | 97.9% | 33.1% |
| 4396894 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.85 | 75.0 | 5.01e-01 | 100.0% | 32.8% |
| 4440408 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.84 | 74.0 | 4.90e-01 | 100.0% | 31.9% |
| 4479187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.84 | 70.0 | 6.35e-01 | 100.0% | 69.2% |
| 3819187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.84 | 70.0 | 6.02e-01 | 100.0% | 60.0% |
| 4355585 | 101.1.1.304 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey | 0.84 | 73.0 | 6.84e-01 | 100.0% | 98.3% |
| 4331817 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.83 | 73.0 | 4.91e-01 | 100.0% | 32.8% |
| 4487261 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.83 | 73.0 | 4.96e-01 | 100.0% | 34.7% |
| 4036335 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.82 | 68.0 | 5.23e-01 | 100.0% | 40.9% |
| 4995716 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.82 | 71.0 | 6.66e-01 | 100.0% | 85.0% |
| 4937450 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.81 | 70.0 | 4.63e-01 | 100.0% | 29.6% |
| 4528028 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.81 | 70.0 | 4.61e-01 | 100.0% | 29.5% |
| 4323683 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.81 | 67.0 | 5.16e-01 | 100.0% | 40.9% |
| 4419601 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.81 | 67.0 | 6.68e-01 | 100.0% | 90.0% |
| 3931083 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.81 | 65.0 | 6.48e-01 | 100.0% | 86.0% |
| 4148226 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.81 | 66.0 | 5.10e-01 | 100.0% | 40.9% |
| 4417174 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.80 | 67.0 | 4.44e-01 | 95.8% | 29.2% |
| 4190614 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.80 | 69.0 | 4.72e-01 | 100.0% | 34.9% |
| 3512113 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.79 | 68.0 | 4.08e-01 | 100.0% | 14.2% |
| 4548095 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.79 | 64.0 | 5.23e-01 | 97.9% | 48.9% |
| 4172794 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.78 | 64.0 | 5.73e-01 | 100.0% | 64.3% |
| 4978898 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 61.0 | 6.29e-01 | 95.8% | 93.3% |
| 3193553 | 101.1.2.212 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cac1_C | 0.77 | 66.0 | 6.04e-01 | 100.0% | 75.4% |
| 5032990 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.77 | 68.0 | 6.03e-01 | 100.0% | 74.3% |
| 4926838 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.77 | 61.0 | 5.58e-01 | 100.0% | 66.2% |
| 4064960 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.75 | 61.0 | 4.15e-01 | 93.8% | 31.1% |
| 3198858 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 66.0 | 5.84e-01 | 100.0% | 71.4% |
| 3909922 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.74 | 66.0 | 6.53e-01 | 100.0% | 100.0% |
| 3586132 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.74 | 60.0 | 5.03e-01 | 100.0% | 66.3% |
| 3534466 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.73 | 63.0 | 5.78e-01 | 100.0% | 80.0% |
| 4472631 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.73 | 57.0 | 5.84e-01 | 93.8% | 93.3% |
| 4014657 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 59.0 | 5.67e-01 | 100.0% | 80.0% |
| 3636036 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 60.0 | 5.60e-01 | 100.0% | 75.0% |
| 4957643 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.72 | 63.0 | 3.92e-01 | 100.0% | 20.4% |
| 4596379 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.72 | 59.0 | 5.35e-01 | 100.0% | 68.6% |
| 3617759 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.71 | 60.0 | 5.35e-01 | 95.8% | 72.9% |
| 3267034 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 59.0 | 5.91e-01 | 100.0% | 96.0% |
| 5012836 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.71 | 62.0 | 3.82e-01 | 100.0% | 18.2% |
| 5035276 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 60.0 | 4.96e-01 | 100.0% | 66.7% |
| 3467989 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 58.0 | 5.47e-01 | 100.0% | 83.3% |
| 3781058 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 58.0 | 5.65e-01 | 100.0% | 94.5% |
| 3948842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 57.0 | 5.53e-01 | 100.0% | 90.9% |
| 4237263 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.68 | 56.0 | 4.31e-01 | 100.0% | 39.2% |
| 4978899 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 57.0 | 4.92e-01 | 100.0% | 87.5% |
| 5021354 | 101.1.2.619 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_33 | 0.67 | 56.0 | 5.16e-01 | 100.0% | 76.9% |
| 1323419 | 316.1.1.34 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DncV-like_NTFase | 0.67 | 56.0 | 3.60e-01 | 100.0% | 20.6% |
| 5007660 | 101.1.1.187 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 | 0.67 | 56.0 | 5.16e-01 | 100.0% | 76.9% |
| 3741291 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.66 | 57.0 | 4.90e-01 | 100.0% | 65.0% |
| 3620979 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 57.0 | 5.49e-01 | 100.0% | 87.3% |
| 5003693 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 54.0 | 5.05e-01 | 100.0% | 76.9% |
| 3229051 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 54.0 | 4.78e-01 | 100.0% | 82.7% |
| 3617137 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 54.0 | 5.24e-01 | 100.0% | 85.5% |
| 3575777 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.64 | 52.0 | 5.17e-01 | 93.8% | 92.0% |
| 3234110 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 51.0 | 3.51e-01 | 100.0% | 26.7% |
| 4946473 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 46.0 | 3.79e-01 | 87.5% | 68.9% |
| 4953311 | 604.20.1.0 ↗ | alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 | 0.55 | 43.0 | 3.65e-01 | 100.0% | 93.0% |
| 3839043 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.53 | 40.0 | 2.93e-01 | 97.9% | 93.5% |