←Back to structures
Filtrate_w_scaffold_6_prodigal-single.1__X__X__00191
Bact-VirFiltrate_w_scaffold_6_prodigal-single.1__X__X__00191
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-259
Domain cluster:
rep: SRR1747045_scaffold_1_prodigal-single.1__X__X__00037__D553-737
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 62.1 | 6.10e-17 | 98.0% | 33.2% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b8bA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.78 | 71.0 | 5.04e-01 | 100.0% | 35.5% |
| 6whcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 38.0 | 3.68e-01 | 87.0% | 54.8% |
| 3agrA01 | 3.30.420.530 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 40.0 | 3.84e-01 | 75.0% | 74.9% |
| 2w5fA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 44.0 | 3.61e-01 | 100.0% | 49.6% |
| 1ltlA01 | 3.30.1640.10 | Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 | 0.52 | 25.0 | 3.58e-01 | 72.0% | 100.0% |
| 4umlA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 32.0 | 3.27e-01 | 100.0% | 61.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942624 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 77.0 | 5.86e-01 | 100.0% | 46.3% |
| 5012376 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 78.0 | 5.33e-01 | 100.0% | 32.8% |
| 5044308 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 76.0 | 5.18e-01 | 100.0% | 31.8% |
| 3164688 | 2500.1.1.6 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › YjjI-like | 0.82 | 69.0 | 4.98e-01 | 100.0% | 34.5% |
| 3946197 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.76 | 71.0 | 5.94e-01 | 100.0% | 69.4% |
| 3699851 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.59 | 28.0 | 3.33e-01 | 97.5% | 62.2% |
| 4982951 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.52 | 38.0 | 3.60e-01 | 100.0% | 61.6% |
| 4293297 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.52 | 34.0 | 4.04e-01 | 75.0% | 97.0% |
| 3958365 | 2002.1.1.108 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO | 0.52 | 28.0 | 3.20e-01 | 100.0% | 68.4% |
D2
high
residues 266-359
Domain cluster:
rep: SRR1747065_scaffold_10_prodigal-single.1__X__X__00157__D48-61_74-141
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13597.12 best | NRDD | 69.3 | 4.00e-19 | 94.7% | 16.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ayjA00 | 4.10.1060.50 | Few Secondary Structures › Irregular › ZNF265 like › | 0.65 | 34.0 | 4.26e-01 | 81.9% | 85.7% |
| 2hpiA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 48.0 | 3.51e-01 | 95.7% | 61.5% |
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 47.0 | 3.56e-01 | 100.0% | 95.3% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 37.0 | 3.44e-01 | 71.3% | 82.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.54 | 28.0 | 3.35e-01 | 72.3% | 72.7% |
| 5khaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 44.0 | 3.34e-01 | 100.0% | 88.5% |
| 3o0fA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 44.0 | 3.42e-01 | 95.7% | 68.5% |
| 2hnhA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 45.0 | 3.30e-01 | 100.0% | 86.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012376 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.91 | 84.0 | 4.97e-01 | 97.9% | 15.7% |
| 5044308 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.88 | 81.0 | 4.78e-01 | 97.9% | 17.9% |
| 4974476 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.86 | 77.0 | 4.57e-01 | 96.8% | 14.4% |
| 4961008 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 77.0 | 4.60e-01 | 96.8% | 16.9% |
| 4976938 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.85 | 79.0 | 4.70e-01 | 100.0% | 15.4% |
| 5048774 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 75.0 | 4.46e-01 | 93.6% | 15.1% |
| 5004456 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.85 | 78.0 | 4.62e-01 | 100.0% | 14.7% |
| 5065401 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 76.0 | 4.50e-01 | 96.8% | 16.3% |
| 5057094 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 75.0 | 4.53e-01 | 97.9% | 16.6% |
| 5001541 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 74.0 | 4.39e-01 | 93.6% | 14.3% |
| 3100301 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.84 | 76.0 | 4.46e-01 | 96.8% | 14.6% |
| 2543587 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.84 | 31.0 | 5.29e-01 | 74.5% | 100.0% |
| 5037353 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 75.0 | 4.48e-01 | 96.8% | 16.7% |
| 4934728 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.83 | 75.0 | 4.49e-01 | 96.8% | 15.3% |
| 5079907 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.83 | 77.0 | 4.61e-01 | 100.0% | 16.0% |
| 3603295 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.82 | 64.0 | 3.85e-01 | 81.9% | 13.8% |
| 4954935 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.81 | 64.0 | 3.80e-01 | 83.0% | 15.2% |
| 5031517 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.80 | 71.0 | 4.30e-01 | 95.7% | 16.5% |
| 4942759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 33.0 | 4.95e-01 | 75.5% | 97.4% |
| 5037576 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.78 | 52.0 | 3.28e-01 | 89.4% | 13.9% |
| 5027411 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.76 | 70.0 | 4.23e-01 | 100.0% | 17.2% |
| 5063434 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.75 | 33.0 | 4.66e-01 | 73.4% | 86.7% |
| 4970624 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.74 | 63.0 | 3.85e-01 | 92.6% | 16.6% |
| 5074578 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.72 | 65.0 | 3.95e-01 | 100.0% | 16.5% |
| 5071328 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.69 | 32.0 | 4.09e-01 | 72.3% | 74.5% |
| 5050543 | 375.1.1.48 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N | 0.62 | 30.0 | 3.70e-01 | 72.3% | 72.7% |
| 4469129 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.59 | 41.0 | 3.87e-01 | 73.4% | 67.8% |
| 4183914 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.58 | 41.0 | 3.86e-01 | 73.4% | 67.8% |
| 4330559 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.58 | 41.0 | 3.80e-01 | 72.3% | 67.8% |
| 5064210 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.58 | 40.0 | 3.62e-01 | 72.3% | 69.8% |
| 4593851 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.57 | 40.0 | 3.82e-01 | 73.4% | 70.9% |
| 4619347 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 38.0 | 3.58e-01 | 70.2% | 71.3% |
| 4985088 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.55 | 38.0 | 3.53e-01 | 72.3% | 69.9% |
| 4638791 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.53 | 42.0 | 3.36e-01 | 85.1% | 48.6% |
| 1572168 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.53 | 41.0 | 3.39e-01 | 85.1% | 50.3% |
| 3511727 | 7558.1.1.11 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C | 0.52 | 45.0 | 3.19e-01 | 100.0% | 70.0% |
| 4988770 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.52 | 42.0 | 3.41e-01 | 87.2% | 49.7% |
D3
medium
residues 1-56