←Back to structures

Formamidopyrimidine-DNA_glycosylase

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

Formamidopyrimidine-DNA_glycosylase__YP_007354485__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354485 ↗
Protein ID:
Formamidopyrimidine-DNA_glycosylase
Kingdom:
euk

Quality

79.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-131
PDB
Domain cluster: rep: S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00412__D4-111
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01149.30 best Fapy_DNA_glyco 47.6 3.50e-12 88.4% 97.4%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.86 83.0 8.13e-01 100.0% 97.1%
3twlA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.77 71.0 7.20e-01 100.0% 99.2%
1nnjA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.75 71.0 7.07e-01 100.0% 97.7%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.73 65.0 6.59e-01 100.0% 96.0%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.71 28.0 4.05e-01 85.3% 77.0%
3w0fA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.71 62.0 6.45e-01 98.4% 99.2%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 36.0 4.61e-01 92.2% 96.1%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.83e-01 89.9% 89.5%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 33.0 4.24e-01 88.4% 98.6%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 35.0 3.14e-01 96.1% 42.1%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 35.0 4.26e-01 76.7% 92.9%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.56 33.0 3.63e-01 93.8% 70.1%
6hpvA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 35.0 4.25e-01 88.4% 98.8%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.54 37.0 4.03e-01 100.0% 84.8%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.54 34.0 3.86e-01 85.3% 83.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 29.0 3.55e-01 93.0% 83.7%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.53 42.0 3.28e-01 84.5% 65.4%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 33.0 3.22e-01 93.8% 58.3%
2wb8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.39e-01 71.3% 91.9%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 3.46e-01 92.2% 65.2%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 3.03e-01 73.6% 79.0%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 36.0 3.39e-01 92.2% 58.6%
2bhzA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 28.0 3.78e-01 78.3% 100.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
145646 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.86 83.0 8.19e-01 100.0% 99.2%
4033403 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.78 74.0 6.98e-01 100.0% 99.3%
3789023 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.78 74.0 6.88e-01 100.0% 98.7%
3856809 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.77 40.0 4.76e-01 92.2% 73.3%
4291331 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.76 72.0 7.10e-01 100.0% 97.0%
4945708 3504.2.1.2 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › H2TH 0.76 72.0 7.10e-01 100.0% 98.5%
4350188 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.76 71.0 6.52e-01 100.0% 98.8%
4422963 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.75 71.0 6.61e-01 100.0% 99.4%
4186554 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.75 70.0 6.96e-01 100.0% 98.5%
4202644 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.75 70.0 7.06e-01 100.0% 99.2%
5074040 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.75 70.0 7.00e-01 100.0% 98.5%
4071792 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.75 70.0 6.93e-01 100.0% 97.8%
4457982 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.75 69.0 6.91e-01 97.7% 99.2%
4424253 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.74 69.0 6.66e-01 100.0% 99.3%
4978702 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.74 70.0 6.98e-01 100.0% 100.0%
4958140 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.74 69.0 6.97e-01 100.0% 99.2%
4544218 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.73 67.0 6.70e-01 97.7% 100.0%
5050803 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.73 68.0 6.82e-01 100.0% 99.2%
5032907 3504.2.1.0 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins 0.73 68.0 6.78e-01 99.2% 98.5%
3885183 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.70 64.0 6.43e-01 100.0% 96.9%
3962450 9.27.1.0 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.67 32.0 3.58e-01 78.3% 57.1%
5014253 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 34.0 4.51e-01 89.9% 90.0%
4228206 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.66 34.0 4.18e-01 87.6% 77.5%
5014686 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.66 29.0 4.31e-01 87.6% 98.2%
4028363 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 39.0 4.51e-01 93.0% 93.3%
3956703 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 45.0 4.81e-01 92.2% 91.8%
3725227 519.1.1.1 ↗ a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS 0.57 35.0 4.26e-01 72.9% 100.0%
3979569 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 29.0 3.18e-01 89.9% 57.3%
5004871 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 30.0 3.51e-01 72.9% 75.6%
3619927 9.2.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7042 0.55 40.0 4.23e-01 87.6% 84.3%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.55 33.0 3.51e-01 72.9% 68.1%
3417002 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 39.0 4.12e-01 94.6% 80.8%
5040587 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 39.0 3.72e-01 92.2% 63.2%
4001579 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 40.0 4.18e-01 86.8% 86.1%
3969438 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 35.0 3.95e-01 77.5% 86.0%
3802399 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 38.0 3.93e-01 92.2% 77.6%
3940934 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.52 28.0 3.27e-01 89.9% 70.5%
3957060 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.51 38.0 3.68e-01 78.3% 80.0%
3742937 519.1.1.1 ↗ a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS 0.50 35.0 3.86e-01 72.1% 100.0%
D2 high residues 145-215_239-278
PDB
Domain cluster: rep: AB605730.1__BAK52944.1__X__00132__D130-268
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF06831.20 best H2TH 46.0 6.00e-12 70.3% 69.9%
PF21025.3 Fapy_DNA_glyco_C 89.5 1.40e-25 38.7% 83.7%