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G1211R

Euk-Vir

African_swine_fever_virus

G1211R__YP_009703146__African_swine_fever_virus__10497

Identity

Accession:
YP_009703146 ↗
Protein ID:
G1211R
Kingdom:
euk

Quality

71.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 202-430
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03104.26 best DNA_pol_B_exo1 57.7 1.70e-15 78.2% 68.6%
D2 medium residues 22-66_161-198
PDB
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 65.0 6.20e-01 100.0% 95.9%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 61.0 5.37e-01 100.0% 90.3%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.33e-01 97.6% 87.9%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.58e-01 95.2% 93.9%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 60.0 5.61e-01 100.0% 96.1%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 58.0 4.91e-01 100.0% 90.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 57.0 5.54e-01 95.2% 94.4%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 57.0 5.18e-01 100.0% 87.1%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 46.0 3.92e-01 77.1% 89.5%
1kopA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.64 51.0 3.74e-01 86.7% 50.7%
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.63 51.0 3.66e-01 86.7% 48.5%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 52.0 5.35e-01 94.0% 97.4%
4xfwA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.61 51.0 3.72e-01 91.6% 65.5%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 50.0 4.45e-01 94.0% 62.1%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 52.0 5.01e-01 98.8% 94.9%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 49.0 5.08e-01 96.4% 96.1%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.58 46.0 4.61e-01 100.0% 87.4%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 42.0 2.82e-01 79.5% 35.8%
1q2lA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 46.0 3.29e-01 90.4% 89.5%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 39.0 3.40e-01 74.7% 86.1%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.61e-01 81.9% 94.6%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 39.0 3.48e-01 75.9% 92.6%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.89e-01 91.6% 42.8%
4bkwA02 3.30.1360.220 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain of unknown function (DUF3480), N-terminal subdomain 0.51 45.0 4.31e-01 100.0% 89.0%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.72e-01 86.7% 36.8%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.50 42.0 3.59e-01 92.8% 80.9%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.12e-01 75.9% 52.3%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.01e-01 75.9% 46.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997715 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 70.0 5.51e-01 100.0% 100.0%
3791987 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.76 69.0 6.19e-01 100.0% 93.9%
4956351 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 68.0 4.14e-01 97.6% 31.2%
3592676 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 69.0 5.98e-01 100.0% 90.4%
3704723 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.76 69.0 5.97e-01 100.0% 90.4%
3222288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 68.0 6.09e-01 100.0% 91.3%
4972474 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 67.0 3.88e-01 98.8% 25.0%
3630622 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 64.0 5.65e-01 100.0% 89.2%
4976869 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 65.0 5.81e-01 100.0% 95.7%
3441179 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.71 63.0 5.55e-01 100.0% 88.8%
3880568 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.71 63.0 5.30e-01 100.0% 88.3%
4327709 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 63.0 5.55e-01 100.0% 85.6%
3991931 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.71 63.0 5.60e-01 100.0% 89.2%
5076488 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 60.0 5.64e-01 92.8% 99.0%
4026722 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.71 63.0 5.32e-01 100.0% 86.4%
3262463 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.71 63.0 5.31e-01 100.0% 80.7%
3356276 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 62.0 5.46e-01 100.0% 89.6%
3610887 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.52e-01 100.0% 95.7%
3679986 2.1.1.305 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C, REPA_OB_2 0.69 62.0 4.18e-01 100.0% 40.0%
3659298 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.69 61.0 4.92e-01 100.0% 66.1%
4026723 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.69 60.0 5.55e-01 100.0% 99.1%
3662669 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.69 60.0 5.02e-01 100.0% 83.3%
3657702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.14e-01 100.0% 85.7%
3666655 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.32e-01 100.0% 96.8%
3658019 2.1.1.285 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2 0.68 60.0 4.04e-01 96.4% 35.7%
3654791 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 60.0 5.06e-01 100.0% 82.8%
3366703 2.1.1.157 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.68 59.0 5.00e-01 95.2% 80.7%
4437479 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 51.0 5.55e-01 90.4% 94.3%
437095 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 59.0 5.33e-01 97.6% 87.9%
4213053 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 59.0 5.62e-01 95.2% 93.7%
4819138 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 37.0 4.60e-01 88.0% 93.6%
4982481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 55.0 5.34e-01 91.6% 100.0%
3667340 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.67 57.0 5.05e-01 96.4% 89.6%
5055355 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 60.0 5.86e-01 100.0% 97.8%
5019744 2.1.1.384 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30889 0.66 58.0 5.61e-01 100.0% 95.8%
3374948 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.66 58.0 5.51e-01 100.0% 94.0%
3252847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 53.0 5.31e-01 88.0% 95.3%
4449302 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 5.21e-01 96.4% 91.4%
4305633 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.65 53.0 5.38e-01 95.2% 92.5%
3963716 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 4.99e-01 94.0% 84.5%
6286 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 46.0 3.92e-01 77.1% 89.5%
5046188 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 5.08e-01 89.2% 96.0%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 38.0 4.08e-01 97.6% 74.3%
4586453 2.12.1.1 beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.59 48.0 4.65e-01 100.0% 80.0%
4033829 2.12.1.1 beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.58 47.0 4.78e-01 100.0% 95.0%
3476860 2.1.1.86 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.57 50.0 4.85e-01 100.0% 91.6%
3250428 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.84e-01 89.2% 57.9%
3408678 2.1.1.86 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 0.56 48.0 4.53e-01 100.0% 91.4%
3373550 309.1.1.2 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.55 46.0 3.31e-01 91.6% 93.6%
3358498 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 49.0 4.63e-01 100.0% 93.0%
4984555 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 41.0 2.83e-01 80.7% 37.0%
162823 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 37.0 3.39e-01 74.7% 90.6%
3498900 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.52 44.0 3.62e-01 97.6% 75.8%
3959903 243.18.1.1 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.51 35.0 2.72e-01 73.5% 70.2%
D3 medium residues 67-160
PDB
D4 medium residues 431-486_579-640
PDB
D5 medium residues 487-578_641-695
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00136.27 best DNA_pol_B 42.8 4.50e-11 57.8% 13.7%
D6 medium residues 796-838_942-987
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2osaA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.61 50.0 4.02e-01 94.4% 81.6%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.60 35.0 2.83e-01 100.0% 31.3%
4jzaA03 1.20.120.1720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 38.0 3.22e-01 100.0% 39.9%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 39.0 3.44e-01 71.9% 88.5%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.56 32.0 3.34e-01 87.6% 60.2%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 38.0 3.85e-01 71.9% 75.0%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 4.06e-01 100.0% 72.5%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.55 40.0 3.87e-01 76.4% 77.8%
3rlbA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.53 46.0 3.77e-01 100.0% 59.1%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.52 45.0 3.71e-01 96.6% 63.6%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.52 41.0 2.64e-01 86.5% 42.8%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.71e-01 93.3% 75.7%
1fntc01 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.51 35.0 2.80e-01 71.9% 85.6%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 42.0 3.06e-01 97.8% 87.6%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 41.0 3.42e-01 93.3% 67.8%
4cgrB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 43.0 3.48e-01 100.0% 62.3%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.50 37.0 3.14e-01 79.8% 73.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278203 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.58 52.0 4.47e-01 100.0% 75.7%
3397832 4273.1.1.1 alpha arrays › PTPA-like › PTPA-like › PTPA-like › PTPA 0.57 49.0 3.48e-01 96.6% 37.6%
3358408 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.57 49.0 4.76e-01 95.5% 99.0%
3787068 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 39.0 2.95e-01 73.0% 70.2%
3880919 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 38.0 3.31e-01 70.8% 87.2%
5042141 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.55 40.0 2.80e-01 79.8% 60.9%
3707729 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.46e-01 87.6% 50.0%
3987415 601.1.1.11 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB 0.52 44.0 3.81e-01 98.9% 88.3%
4951650 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 42.0 3.03e-01 89.9% 67.2%
D7 medium residues 1141-1207
PDB