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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00106
Bact-VirGOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00106
Identity
- Kingdom:
- phage
Quality
45.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-72
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.82 | 65.0 | 6.45e-01 | 100.0% | 81.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.79 | 60.0 | 5.79e-01 | 100.0% | 72.4% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.78 | 62.0 | 5.91e-01 | 100.0% | 73.4% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.78 | 58.0 | 5.67e-01 | 100.0% | 72.4% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.74 | 54.0 | 5.45e-01 | 100.0% | 79.1% |
| 2zw2A00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.71 | 64.0 | 5.91e-01 | 100.0% | 96.5% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.69 | 49.0 | 4.46e-01 | 98.5% | 55.4% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.69 | 60.0 | 5.69e-01 | 100.0% | 96.4% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.68 | 49.0 | 5.17e-01 | 100.0% | 86.7% |
| 5e1qA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.68 | 47.0 | 4.18e-01 | 100.0% | 51.0% |
| 1gtdA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.68 | 59.0 | 5.57e-01 | 98.5% | 97.5% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.66 | 57.0 | 5.42e-01 | 100.0% | 96.4% |
| 2d73A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 46.0 | 3.90e-01 | 100.0% | 45.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.63 | 49.0 | 3.70e-01 | 100.0% | 34.3% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.60 | 52.0 | 3.67e-01 | 100.0% | 32.5% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.60 | 52.0 | 4.54e-01 | 100.0% | 81.1% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.59 | 51.0 | 3.56e-01 | 100.0% | 47.9% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 52.0 | 4.55e-01 | 100.0% | 98.1% |
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 52.0 | 4.58e-01 | 100.0% | 96.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.58 | 42.0 | 4.10e-01 | 100.0% | 71.4% |
| 5cadA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 37.0 | 2.79e-01 | 100.0% | 24.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 42.0 | 3.87e-01 | 98.5% | 58.5% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.55e-01 | 100.0% | 50.5% |
| 5l10B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.56 | 40.0 | 3.00e-01 | 76.5% | 30.6% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 44.0 | 3.40e-01 | 100.0% | 35.6% |
| 4er8A00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.55 | 47.0 | 3.66e-01 | 100.0% | 57.6% |
| 1ivzA00 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.55 | 48.0 | 3.92e-01 | 100.0% | 90.2% |
| 2zaiA04 | 2.60.40.3030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 3.78e-01 | 100.0% | 62.1% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 46.0 | 2.90e-01 | 100.0% | 46.4% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.54 | 45.0 | 3.64e-01 | 100.0% | 47.4% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 46.0 | 4.22e-01 | 100.0% | 89.4% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.53 | 45.0 | 3.46e-01 | 100.0% | 45.9% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.52 | 43.0 | 3.16e-01 | 91.2% | 38.1% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.51 | 43.0 | 2.73e-01 | 100.0% | 49.3% |
| 4mkmA01 | 2.60.40.3930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.54e-01 | 100.0% | 77.4% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.40e-01 | 100.0% | 53.2% |
| 5t0oA02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.51 | 41.0 | 3.70e-01 | 95.6% | 90.3% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.85 | 64.0 | 6.99e-01 | 100.0% | 96.4% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.85 | 66.0 | 7.02e-01 | 100.0% | 93.2% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.85 | 65.0 | 6.29e-01 | 100.0% | 73.3% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.84 | 67.0 | 6.49e-01 | 100.0% | 77.3% |
| 2106284 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.84 | 67.0 | 6.76e-01 | 100.0% | 86.6% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.83 | 63.0 | 6.56e-01 | 100.0% | 85.9% |
| 2741079 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.83 | 66.0 | 6.53e-01 | 100.0% | 81.7% |
| 5030993 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 63.0 | 5.95e-01 | 100.0% | 68.8% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.82 | 63.0 | 5.36e-01 | 100.0% | 52.4% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.82 | 63.0 | 6.26e-01 | 100.0% | 78.6% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 63.0 | 6.65e-01 | 100.0% | 91.7% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 64.0 | 5.93e-01 | 100.0% | 67.5% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 63.0 | 6.73e-01 | 100.0% | 94.8% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 62.0 | 6.06e-01 | 100.0% | 73.3% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 62.0 | 5.28e-01 | 100.0% | 50.9% |
| 4943401 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.82 | 64.0 | 5.93e-01 | 100.0% | 67.1% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.81 | 62.0 | 5.38e-01 | 100.0% | 54.5% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.81 | 62.0 | 6.41e-01 | 100.0% | 87.3% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.80 | 61.0 | 6.49e-01 | 100.0% | 94.8% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.80 | 65.0 | 6.11e-01 | 100.0% | 73.8% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.78 | 63.0 | 5.86e-01 | 100.0% | 69.4% |
| 1442666 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.78 | 62.0 | 5.85e-01 | 100.0% | 71.6% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.76 | 60.0 | 6.14e-01 | 100.0% | 89.2% |
| 4008166 | 3115.1.1.10 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 | 0.76 | 61.0 | 5.43e-01 | 100.0% | 62.1% |
| 5033281 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.75 | 61.0 | 6.25e-01 | 100.0% | 93.8% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.74 | 57.0 | 5.88e-01 | 100.0% | 87.7% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.73 | 54.0 | 5.70e-01 | 100.0% | 90.0% |
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.70 | 53.0 | 5.33e-01 | 100.0% | 81.4% |
| 5010290 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.69 | 62.0 | 5.68e-01 | 100.0% | 91.1% |
| 4947546 | 304.100.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like | 0.68 | 60.0 | 5.62e-01 | 100.0% | 98.8% |
| 4976844 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.68 | 57.0 | 4.30e-01 | 100.0% | 38.8% |
| 3590783 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.67 | 55.0 | 4.41e-01 | 100.0% | 44.1% |
| 3599867 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.65 | 57.0 | 4.72e-01 | 98.5% | 56.7% |
| 3823190 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.65 | 47.0 | 3.60e-01 | 100.0% | 33.1% |
| 3280008 | 3115.1.1.2 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 | 0.64 | 57.0 | 5.21e-01 | 100.0% | 78.9% |
| 1790231 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.61 | 55.0 | 5.01e-01 | 100.0% | 88.8% |
| 3188436 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 48.0 | 3.72e-01 | 100.0% | 37.5% |
| 3634674 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.60 | 44.0 | 2.85e-01 | 100.0% | 15.1% |
| 3721585 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.58 | 51.0 | 4.22e-01 | 100.0% | 90.4% |
| 3792704 | 304.100.1.3 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › NRF | 0.58 | 49.0 | 3.85e-01 | 100.0% | 42.6% |
| 4680021 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.58 | 49.0 | 3.17e-01 | 100.0% | 23.3% |
| 3720893 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.58 | 50.0 | 4.12e-01 | 100.0% | 90.8% |
| 3696675 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.57 | 51.0 | 4.43e-01 | 100.0% | 87.6% |
| 3397485 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.57 | 47.0 | 4.03e-01 | 100.0% | 56.4% |
| 3394713 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.57 | 49.0 | 3.81e-01 | 100.0% | 42.5% |
| 4256953 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.57 | 50.0 | 3.96e-01 | 98.5% | 82.1% |
| 3525488 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.57 | 49.0 | 4.06e-01 | 100.0% | 91.5% |
| 3569124 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.57 | 48.0 | 3.75e-01 | 100.0% | 95.2% |
| 3723810 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.57 | 50.0 | 4.29e-01 | 100.0% | 94.5% |
| None | — | 0.56 | 48.0 | 3.10e-01 | 100.0% | 23.6% | |
| 3331566 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 48.0 | 4.05e-01 | 100.0% | 57.4% |
| 4930528 | 11.1.1.1432 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26259 | 0.55 | 41.0 | 3.42e-01 | 100.0% | 45.8% |
| 3408652 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 46.0 | 3.51e-01 | 100.0% | 40.0% |
| 3733208 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.54 | 45.0 | 3.65e-01 | 92.6% | 92.3% |
| 3506521 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.53e-01 | 100.0% | 49.2% |
| 184695 | 11.19.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › YajI-like › YajI-like › DUF3251 | 0.54 | 45.0 | 3.42e-01 | 100.0% | 38.1% |
| 2464208 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.54 | 47.0 | 3.61e-01 | 100.0% | 62.5% |
| 3772852 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.53 | 44.0 | 3.67e-01 | 100.0% | 51.7% |
| 3535172 | 11.1.1.664 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › THSD1_D2 | 0.52 | 38.0 | 3.29e-01 | 79.4% | 81.8% |
| 3525259 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.51 | 43.0 | 3.27e-01 | 100.0% | 47.3% |
| 3484653 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 39.0 | 3.45e-01 | 98.5% | 53.6% |
| 3582249 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.50 | 43.0 | 3.68e-01 | 98.5% | 94.8% |
D2
high
residues 98-223