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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00249
Bact-VirGOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00249
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-107
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6g1nD01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.78 | 59.0 | 6.64e-01 | 96.2% | 100.0% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 41.0 | 5.12e-01 | 88.7% | 97.0% |
| 3k6qA02 | 3.30.160.620 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 47.0 | 5.14e-01 | 94.3% | 97.8% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 3.07e-01 | 100.0% | 39.9% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.58 | 35.0 | 2.98e-01 | 100.0% | 38.9% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 25.0 | 3.17e-01 | 92.5% | 66.1% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 41.0 | 3.64e-01 | 97.2% | 54.4% |
| 3fvzA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 38.0 | 2.73e-01 | 77.4% | 78.1% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.52 | 34.0 | 3.29e-01 | 100.0% | 58.1% |
| 2cm5A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 46.0 | 4.16e-01 | 100.0% | 94.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5020790 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.84 | 42.0 | 5.96e-01 | 94.3% | 96.4% |
| 4959886 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.83 | 42.0 | 5.96e-01 | 96.2% | 98.2% |
| 4992374 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.82 | 47.0 | 6.10e-01 | 95.3% | 95.4% |
| 5020788 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.80 | 46.0 | 5.87e-01 | 70.8% | 93.8% |
| 5061231 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.73 | 41.0 | 5.41e-01 | 91.5% | 100.0% |
| 3307519 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.72 | 47.0 | 5.65e-01 | 98.1% | 100.0% |
| 5012231 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.67 | 46.0 | 5.21e-01 | 98.1% | 92.5% |
| 3383283 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.63 | 30.0 | 3.71e-01 | 92.5% | 72.3% |
| 5083382 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.60 | 31.0 | 3.86e-01 | 98.1% | 85.0% |
| 4985312 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.58 | 31.0 | 3.00e-01 | 99.1% | 44.2% |
| 5057503 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.58 | 30.0 | 3.80e-01 | 98.1% | 86.7% |
| 4259370 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 28.0 | 3.67e-01 | 96.2% | 87.3% |
| 4018598 | 2.1.1.219 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 | 0.57 | 32.0 | 3.60e-01 | 98.1% | 71.2% |
| 3211619 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 28.0 | 3.20e-01 | 94.3% | 62.7% |
| 3706918 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 36.0 | 4.04e-01 | 100.0% | 86.7% |
| 4399208 | 2.1.1.83 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N | 0.52 | 28.0 | 3.16e-01 | 98.1% | 66.3% |
| 3782651 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 32.0 | 3.66e-01 | 98.1% | 83.7% |
| 3618967 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 45.0 | 4.09e-01 | 100.0% | 97.2% |