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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00287
Bact-VirGOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00287
Identity
- Kingdom:
- phage
Quality
65.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-122
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xrcC04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 44.0 | 3.79e-01 | 85.5% | 39.3% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 30.0 | 4.53e-01 | 82.9% | 92.0% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 59.0 | 6.06e-01 | 100.0% | 93.0% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.69 | 49.0 | 5.45e-01 | 91.5% | 95.6% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 48.0 | 4.97e-01 | 93.2% | 76.6% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 32.0 | 4.27e-01 | 90.6% | 88.1% |
| 7pzoA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 44.0 | 4.78e-01 | 82.1% | 81.2% |
| 1ntpA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 44.0 | 4.64e-01 | 85.5% | 76.7% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 56.0 | 5.18e-01 | 98.3% | 72.8% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 44.0 | 4.89e-01 | 81.2% | 87.0% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 45.0 | 4.95e-01 | 80.3% | 87.2% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 31.0 | 4.02e-01 | 100.0% | 80.0% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 31.0 | 3.74e-01 | 100.0% | 68.0% |
| 1faxA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 45.0 | 4.68e-01 | 85.5% | 77.6% |
| 1ltoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 46.0 | 4.74e-01 | 85.5% | 78.9% |
| 1ym0A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 46.0 | 4.69e-01 | 85.5% | 76.8% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 51.0 | 5.31e-01 | 85.5% | 97.2% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 47.0 | 5.01e-01 | 90.6% | 87.4% |
| 2joeA01 | 3.30.1830.10 | Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like | 0.63 | 43.0 | 4.22e-01 | 94.0% | 64.1% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 49.0 | 4.09e-01 | 100.0% | 47.8% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 42.0 | 4.26e-01 | 86.3% | 71.7% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 54.0 | 5.07e-01 | 95.7% | 82.5% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 48.0 | 4.93e-01 | 83.8% | 90.9% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 35.0 | 4.26e-01 | 73.5% | 93.1% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 37.0 | 4.45e-01 | 70.1% | 97.3% |
| 5ih0A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 37.0 | 4.03e-01 | 88.9% | 77.4% |
| 8e7cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 39.0 | 4.48e-01 | 88.0% | 98.8% |
| 2qeaB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 51.0 | 4.69e-01 | 97.4% | 75.6% |
| 2w1jA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.58 | 48.0 | 4.09e-01 | 90.6% | 85.1% |
| 5jcvA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.58 | 45.0 | 3.98e-01 | 83.8% | 93.7% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 42.0 | 3.95e-01 | 75.2% | 95.7% |
| 2xxlA03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 46.0 | 4.47e-01 | 85.5% | 76.9% |
| 4d70A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.57 | 46.0 | 4.18e-01 | 87.2% | 83.1% |
| 4ux7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.57 | 45.0 | 3.79e-01 | 84.6% | 81.9% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 38.0 | 4.22e-01 | 88.0% | 88.8% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.57 | 40.0 | 4.23e-01 | 72.6% | 85.6% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.56 | 33.0 | 4.00e-01 | 100.0% | 90.5% |
| 2zbvC02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.56 | 38.0 | 4.10e-01 | 70.1% | 95.1% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 49.0 | 4.04e-01 | 97.4% | 82.3% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 4.10e-01 | 73.5% | 81.8% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 40.0 | 3.95e-01 | 91.5% | 69.0% |
| 2ln7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.55 | 44.0 | 4.14e-01 | 86.3% | 89.1% |
| 1whjA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.55 | 36.0 | 3.81e-01 | 94.0% | 75.5% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.55 | 39.0 | 4.08e-01 | 75.2% | 93.7% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 35.0 | 3.87e-01 | 72.6% | 83.7% |
| 4ix3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 39.0 | 4.01e-01 | 88.0% | 80.5% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.53 | 43.0 | 3.73e-01 | 90.6% | 74.7% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.53 | 24.0 | 3.35e-01 | 76.9% | 90.7% |
| 1k8kD02 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 38.0 | 3.73e-01 | 100.0% | 68.7% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.52 | 43.0 | 3.76e-01 | 90.6% | 78.6% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.52 | 36.0 | 4.10e-01 | 74.4% | 95.5% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.52 | 41.0 | 4.05e-01 | 99.1% | 80.3% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 35.0 | 5.11e-01 | 92.3% | 89.1% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 33.0 | 4.56e-01 | 100.0% | 80.0% |
| 5042986 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 32.0 | 4.41e-01 | 88.0% | 78.3% |
| 3947700 | 4.8.1.25 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB | 0.75 | 33.0 | 4.45e-01 | 88.0% | 77.8% |
| 4422252 | 4.1.1.455 ↗ | beta barrels › SH3 › SH3 › SH3 › DSRB | 0.75 | 33.0 | 4.55e-01 | 88.0% | 81.7% |
| 4938919 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 31.0 | 4.08e-01 | 87.2% | 69.2% |
| 3210962 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 44.0 | 4.87e-01 | 76.9% | 73.7% |
| 5004050 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 33.0 | 4.24e-01 | 96.6% | 71.4% |
| 1567496 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.72 | 33.0 | 4.64e-01 | 91.5% | 89.5% |
| 3721062 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.72 | 42.0 | 4.80e-01 | 100.0% | 78.8% |
| 3510786 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.71 | 35.0 | 4.54e-01 | 99.1% | 84.6% |
| 3740208 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 35.0 | 4.52e-01 | 100.0% | 84.6% |
| 4075769 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.70 | 33.0 | 4.57e-01 | 98.3% | 92.7% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.69 | 34.0 | 4.19e-01 | 100.0% | 73.3% |
| 4078162 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 38.0 | 4.70e-01 | 99.1% | 85.1% |
| 3942928 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 46.0 | 5.32e-01 | 84.6% | 94.1% |
| 5000741 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.67 | 33.0 | 4.24e-01 | 94.0% | 83.1% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.67 | 52.0 | 5.39e-01 | 82.9% | 96.4% |
| 3935469 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.67 | 34.0 | 4.28e-01 | 99.1% | 81.4% |
| 3451171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 34.0 | 4.41e-01 | 100.0% | 87.7% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.67 | 44.0 | 5.13e-01 | 96.6% | 92.9% |
| 1117606 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.66 | 53.0 | 5.08e-01 | 85.5% | 98.5% |
| 3867207 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.66 | 37.0 | 4.04e-01 | 94.9% | 67.4% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 37.0 | 4.80e-01 | 72.6% | 100.0% |
| 4932427 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.65 | 42.0 | 4.78e-01 | 78.6% | 86.7% |
| 3942828 | 1.1.13.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 | 0.64 | 52.0 | 4.84e-01 | 86.3% | 92.4% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 35.0 | 4.42e-01 | 89.7% | 90.0% |
| 3698630 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.64 | 48.0 | 5.07e-01 | 89.7% | 87.6% |
| 3237729 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 45.0 | 4.80e-01 | 73.5% | 86.7% |
| 1117666 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.63 | 39.0 | 4.46e-01 | 99.1% | 83.5% |
| 1563513 | 1.1.8.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd | 0.63 | 45.0 | 4.75e-01 | 79.5% | 81.3% |
| 5044537 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.63 | 41.0 | 4.79e-01 | 91.5% | 95.0% |
| 4937389 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.62 | 35.0 | 3.68e-01 | 72.6% | 58.2% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.61 | 34.0 | 3.87e-01 | 72.6% | 71.1% |
| 4270923 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.61 | 37.0 | 2.87e-01 | 90.6% | 25.4% |
| 3409587 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 33.0 | 3.67e-01 | 72.6% | 67.8% |
| 3622139 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 32.0 | 3.60e-01 | 72.6% | 65.6% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.60 | 34.0 | 4.10e-01 | 75.2% | 86.7% |
| 162092 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.59 | 51.0 | 4.98e-01 | 94.0% | 87.0% |
| 5024134 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.59 | 46.0 | 4.39e-01 | 83.8% | 87.9% |
| 5052170 | 1.1.8.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III | 0.58 | 45.0 | 4.69e-01 | 94.9% | 88.2% |
| 3704576 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 40.0 | 3.19e-01 | 74.4% | 63.1% |
| 3730229 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.56 | 31.0 | 3.75e-01 | 71.8% | 82.7% |
| 1942280 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.56 | 44.0 | 3.81e-01 | 84.6% | 84.7% |
| 184861 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.55 | 38.0 | 3.29e-01 | 71.8% | 72.8% |
| 3174977 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 33.0 | 3.62e-01 | 81.2% | 74.7% |
| 185719 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.53 | 43.0 | 3.73e-01 | 90.6% | 74.7% |
| 3387119 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.52 | 36.0 | 4.04e-01 | 92.3% | 91.1% |
| 4523548 | 4.8.1.35 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 | 0.52 | 36.0 | 4.13e-01 | 84.6% | 96.5% |
| 3279470 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.52 | 38.0 | 4.34e-01 | 97.4% | 100.0% |
| 4547801 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 37.0 | 4.18e-01 | 95.7% | 96.7% |
| 3961987 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.52 | 43.0 | 3.72e-01 | 93.2% | 76.9% |
| 4002655 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 40.0 | 3.83e-01 | 83.8% | 80.0% |
| 3959601 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 43.0 | 3.68e-01 | 93.2% | 77.4% |
| 3958869 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.50 | 40.0 | 3.33e-01 | 87.2% | 73.1% |
D2
high
residues 139-291
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 28.5 | 2.00e-06 | 89.5% | 80.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 78.0 | 7.27e-01 | 100.0% | 96.2% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 76.0 | 7.02e-01 | 100.0% | 96.8% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 76.0 | 7.08e-01 | 100.0% | 97.3% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.79 | 75.0 | 6.71e-01 | 100.0% | 95.6% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.79 | 75.0 | 7.26e-01 | 100.0% | 98.2% |
| 2fsqA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.72 | 67.0 | 5.79e-01 | 100.0% | 84.9% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 27.0 | 3.54e-01 | 95.4% | 88.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 80.0 | 7.58e-01 | 100.0% | 98.9% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 7.46e-01 | 100.0% | 97.2% |
| None | — | 0.83 | 79.0 | 7.43e-01 | 100.0% | 97.8% | |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.82 | 78.0 | 7.12e-01 | 100.0% | 94.4% |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.27e-01 | 100.0% | 96.2% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 78.0 | 7.21e-01 | 100.0% | 96.8% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.33e-01 | 100.0% | 98.3% |
| 4951796 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 78.0 | 7.03e-01 | 100.0% | 98.0% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.82 | 77.0 | 7.24e-01 | 100.0% | 96.7% |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 78.0 | 7.07e-01 | 100.0% | 95.9% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 7.21e-01 | 100.0% | 96.8% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 7.35e-01 | 100.0% | 97.7% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.81 | 77.0 | 7.15e-01 | 100.0% | 96.2% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 6.85e-01 | 100.0% | 84.4% |
| 3412490 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 77.0 | 6.85e-01 | 100.0% | 96.6% |
| 4946449 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 7.15e-01 | 100.0% | 97.3% |
| 3464521 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 76.0 | 6.65e-01 | 100.0% | 94.5% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 76.0 | 7.05e-01 | 98.7% | 94.6% |
| None | — | 0.81 | 76.0 | 7.13e-01 | 100.0% | 97.3% | |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 76.0 | 7.19e-01 | 100.0% | 99.4% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 76.0 | 7.04e-01 | 100.0% | 96.3% |
| None | — | 0.80 | 76.0 | 7.08e-01 | 100.0% | 97.3% | |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 76.0 | 7.12e-01 | 100.0% | 98.3% |
| 3270425 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.80 | 75.0 | 6.88e-01 | 100.0% | 97.9% |
| 3205096 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.02e-01 | 100.0% | 96.8% |
| 4025967 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.80 | 75.0 | 6.26e-01 | 100.0% | 97.2% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 76.0 | 7.03e-01 | 100.0% | 97.8% |
| 3698720 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 75.0 | 6.50e-01 | 100.0% | 87.0% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.00e-01 | 100.0% | 96.2% |
| 4965442 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 75.0 | 7.39e-01 | 99.3% | 99.4% |
| 3250014 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 62.0 | 6.47e-01 | 81.0% | 97.1% |
| 4046553 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 75.0 | 7.18e-01 | 100.0% | 96.5% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 73.0 | 6.86e-01 | 97.4% | 97.8% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 75.0 | 6.96e-01 | 100.0% | 98.4% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 74.0 | 6.95e-01 | 100.0% | 97.8% |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.78 | 73.0 | 6.65e-01 | 100.0% | 97.5% |
| 5055911 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 74.0 | 6.98e-01 | 100.0% | 97.8% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 73.0 | 6.89e-01 | 99.3% | 98.3% |
| 5063905 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 74.0 | 7.13e-01 | 100.0% | 97.6% |
| 3730050 | 264.1.1.5 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest | 0.78 | 73.0 | 6.28e-01 | 100.0% | 90.8% |
| 2773887 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.77 | 71.0 | 6.29e-01 | 100.0% | 95.4% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 73.0 | 7.09e-01 | 100.0% | 96.4% |
| 5058094 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.76 | 72.0 | 6.89e-01 | 100.0% | 98.9% |
| 2502534 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.54 | 26.0 | 3.32e-01 | 92.8% | 77.0% |
| 5001168 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.53 | 27.0 | 3.22e-01 | 78.4% | 70.0% |
| 3472865 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 39.0 | 4.31e-01 | 94.8% | 96.7% |
| 2579126 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.52 | 32.0 | 3.30e-01 | 73.2% | 61.8% |
| 5028505 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.52 | 32.0 | 3.31e-01 | 73.2% | 63.6% |
| 4882592 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.52 | 31.0 | 3.22e-01 | 73.2% | 61.0% |
| 3590584 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 40.0 | 4.23e-01 | 94.1% | 91.9% |
| 4956007 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.51 | 32.0 | 3.78e-01 | 93.5% | 91.4% |
D3
high
residues 306-379