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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00301

Bact-Vir

GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00301

Identity

Kingdom:
phage

Quality

49.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 139-203
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vygD00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.74 66.0 5.27e-01 95.4% 72.3%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 56.0 4.54e-01 90.8% 90.2%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 54.0 4.22e-01 87.7% 86.4%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 52.0 4.01e-01 89.2% 73.4%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 51.0 4.43e-01 87.7% 96.2%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 51.0 4.47e-01 87.7% 61.0%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.64 51.0 4.04e-01 89.2% 84.1%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 57.0 5.46e-01 96.9% 91.9%
4lzkA00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.63 49.0 3.74e-01 86.2% 89.3%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 3.95e-01 89.2% 87.0%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.61 39.0 3.12e-01 84.6% 32.1%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 3.76e-01 90.8% 67.9%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.22e-01 90.8% 81.3%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 4.22e-01 90.8% 92.2%
4n6mB00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.11e-01 90.8% 82.8%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 4.10e-01 90.8% 89.1%
5vqjA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.59 44.0 3.04e-01 83.1% 23.6%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 51.0 4.14e-01 100.0% 88.0%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 52.0 4.26e-01 100.0% 57.4%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 4.14e-01 90.8% 93.9%
5l16A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.59 42.0 3.47e-01 76.9% 100.0%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 3.73e-01 90.8% 82.0%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.23e-01 90.8% 68.1%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.58 46.0 4.19e-01 89.2% 87.9%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 3.79e-01 92.3% 56.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 38.0 4.19e-01 86.2% 93.8%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.57 47.0 3.28e-01 92.3% 87.2%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.57 45.0 3.09e-01 93.8% 50.5%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 3.60e-01 90.8% 76.6%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.56 42.0 3.94e-01 83.1% 71.1%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.03e-01 92.3% 94.9%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.72e-01 89.2% 79.6%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.55 43.0 3.60e-01 89.2% 77.2%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 36.0 3.01e-01 81.5% 34.9%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 40.0 2.51e-01 81.5% 37.0%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 43.0 3.39e-01 92.3% 54.8%
4fumA01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.54 38.0 3.70e-01 73.8% 85.1%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.54 42.0 3.43e-01 89.2% 76.5%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 44.0 3.28e-01 95.4% 74.1%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 39.0 3.10e-01 80.0% 65.3%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.70e-01 95.4% 90.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 43.0 3.33e-01 92.3% 61.0%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.53 42.0 3.29e-01 93.8% 71.3%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.79e-01 93.8% 21.7%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 40.0 3.51e-01 84.6% 94.0%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.52 36.0 4.00e-01 78.5% 97.9%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 41.0 3.27e-01 92.3% 76.2%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 2.90e-01 81.5% 100.0%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.17e-01 86.2% 63.8%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.51 40.0 3.69e-01 90.8% 97.8%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.23e-01 84.6% 47.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4238279 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.69 56.0 4.67e-01 90.8% 92.2%
3213653 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 57.0 5.36e-01 93.8% 92.5%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.67 60.0 5.33e-01 98.5% 84.4%
3598427 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 53.0 4.17e-01 87.7% 82.9%
3702518 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 52.0 4.45e-01 87.7% 99.1%
3931232 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 4.44e-01 90.8% 71.2%
3229374 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.66 52.0 3.87e-01 89.2% 33.9%
3718042 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.66 57.0 3.48e-01 100.0% 81.6%
3205559 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.65 58.0 4.44e-01 100.0% 53.1%
4021296 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.13e-01 95.4% 50.0%
3226923 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.64 52.0 3.25e-01 89.2% 22.5%
3226630 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.64 45.0 3.41e-01 73.8% 54.4%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 55.0 4.56e-01 98.5% 68.3%
3258054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.36e-01 100.0% 67.6%
None 0.63 51.0 3.40e-01 90.8% 32.6%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.62 55.0 4.87e-01 100.0% 71.6%
3361760 2003.1.3.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8, Pyr_redox_3 0.62 55.0 3.74e-01 100.0% 58.0%
4586503 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 47.0 3.80e-01 84.6% 82.2%
3426315 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 47.0 4.28e-01 84.6% 80.0%
3303838 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.61 47.0 3.45e-01 84.6% 70.7%
5014316 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 49.0 3.77e-01 90.8% 41.2%
4464656 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.61 49.0 3.36e-01 93.8% 53.0%
2712795 7503.1.1.20 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF7499 0.61 49.0 3.68e-01 90.8% 85.5%
3960795 706.2.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.61 39.0 4.39e-01 72.3% 93.3%
3453844 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 50.0 3.18e-01 90.8% 24.2%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.58 49.0 3.01e-01 90.8% 18.1%
5013082 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.58 45.0 3.60e-01 86.2% 90.4%
None 0.57 41.0 2.85e-01 78.5% 23.0%
3677000 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 46.0 3.52e-01 87.7% 84.0%
2658958 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.57 38.0 3.17e-01 83.1% 36.5%
2658868 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.57 41.0 3.33e-01 83.1% 38.1%
3612689 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.92e-01 92.3% 98.2%
3661144 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 46.0 2.92e-01 90.8% 24.8%
1758564 69.1.1.2 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.56 39.0 2.86e-01 72.3% 92.5%
3958247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 40.0 2.77e-01 76.9% 21.8%
3170704 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.93e-01 96.9% 54.1%
3389001 883.1.1.3 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.55 44.0 3.08e-01 90.8% 59.6%
5002376 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.58e-01 84.6% 77.1%
1034330 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 39.0 3.10e-01 80.0% 65.3%
3968190 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.84e-01 90.8% 62.1%
3813872 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 41.0 2.81e-01 92.3% 21.0%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 41.0 3.27e-01 87.7% 86.9%
3808531 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 42.0 2.84e-01 95.4% 21.4%
3739582 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 4.09e-01 81.5% 94.8%
3805924 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 45.0 3.34e-01 100.0% 83.2%
4244412 11.1.1.929 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28202 0.53 41.0 3.16e-01 87.7% 93.1%
3905578 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.41e-01 81.5% 83.8%
4643563 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 40.0 3.76e-01 90.8% 78.9%
3673071 7516.1.1.16 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 0.52 41.0 2.81e-01 89.2% 25.5%
3517405 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.58e-01 73.8% 77.1%
5011661 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.52 39.0 2.95e-01 87.7% 46.8%
4514459 4099.1.1.31 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.51 38.0 2.81e-01 83.1% 30.0%
3741960 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.51 42.0 2.78e-01 98.5% 81.5%
3400385 883.1.1.3 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.51 41.0 2.86e-01 89.2% 85.3%
4010890 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.13e-01 86.2% 38.6%
3446217 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 40.0 2.67e-01 89.2% 36.5%
3648091 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.51 43.0 3.33e-01 96.9% 72.7%
4002282 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.51 38.0 2.89e-01 87.7% 61.1%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.51 41.0 2.97e-01 95.4% 39.5%
5055337 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 39.0 3.09e-01 90.8% 43.8%
D2 medium residues 1-97
PDB