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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00324

Bact-Vir

GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00324

Identity

Kingdom:
phage

Quality

60.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-192_227-258_393-440
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.68 41.0 4.97e-01 82.7% 92.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942943 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.77 55.0 4.99e-01 72.6% 94.5%
4891117 4038.1.1.11 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal 0.75 70.0 4.91e-01 99.5% 90.3%
4096808 191.1.1.4 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_2 0.52 28.0 3.16e-01 79.2% 66.9%
D2 high residues 450-500
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f7hA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.59 48.0 3.13e-01 94.1% 88.4%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.58 43.0 2.64e-01 86.3% 84.2%
D3 high residues 636-738
PDB