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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00335

Bact-Vir

GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00335

Identity

Kingdom:
phage

Quality

67.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-48_60-73
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 55.0 4.45e-01 100.0% 42.9%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 47.0 3.91e-01 100.0% 41.1%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 45.0 3.49e-01 82.0% 31.6%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 47.0 3.98e-01 100.0% 44.1%
6c80A03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.64 54.0 3.55e-01 100.0% 45.0%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 43.0 3.51e-01 100.0% 34.6%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 53.0 4.26e-01 100.0% 90.9%
2fh5A01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 48.0 3.66e-01 86.0% 74.6%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 48.0 4.17e-01 100.0% 54.4%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.62 53.0 4.98e-01 100.0% 79.4%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 3.93e-01 100.0% 49.6%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.61 45.0 3.24e-01 100.0% 25.3%
3l48A01 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.61 43.0 3.79e-01 100.0% 50.0%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 47.0 3.53e-01 100.0% 33.1%
2mf9A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 50.0 3.64e-01 100.0% 47.8%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.59 42.0 2.79e-01 100.0% 16.5%
4ccdA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 43.0 2.74e-01 100.0% 15.2%
3jxvA02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 50.0 3.86e-01 100.0% 66.9%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 45.0 4.60e-01 100.0% 90.0%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 48.0 3.18e-01 100.0% 31.0%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.85e-01 100.0% 50.4%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 42.0 3.19e-01 84.0% 31.5%
4cj0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.96e-01 100.0% 50.5%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 44.0 3.31e-01 84.0% 78.9%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 44.0 3.51e-01 84.0% 77.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 49.0 3.78e-01 100.0% 43.6%
4tweA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.57 44.0 3.09e-01 100.0% 97.4%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 40.0 3.07e-01 84.0% 28.1%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.47e-01 100.0% 43.2%
7eu3401 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 47.0 3.85e-01 100.0% 83.7%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 41.0 3.09e-01 84.0% 29.0%
3k9tA02 3.50.30.90 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Domain of unknown function DUF2172 0.56 47.0 3.91e-01 100.0% 88.7%
2p9rA00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 44.0 3.61e-01 100.0% 45.1%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 42.0 3.27e-01 84.0% 39.7%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 45.0 3.58e-01 100.0% 41.9%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 38.0 3.16e-01 84.0% 35.8%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 41.0 3.22e-01 86.0% 90.2%
2qlvB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.64e-01 100.0% 51.7%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 45.0 3.80e-01 100.0% 77.7%
3fedA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.54 43.0 2.99e-01 100.0% 97.3%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 40.0 3.16e-01 84.0% 80.2%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.56e-01 100.0% 45.7%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 42.0 3.08e-01 88.0% 76.2%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.75e-01 100.0% 96.8%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.57e-01 100.0% 49.0%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.23e-01 100.0% 33.3%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 45.0 3.95e-01 100.0% 87.3%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 46.0 4.45e-01 100.0% 98.2%
2kfwA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 43.0 3.45e-01 100.0% 64.6%
3sdeA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 42.0 3.63e-01 98.0% 87.6%
2zxqA05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 2.77e-01 100.0% 23.2%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 39.0 2.90e-01 88.0% 68.5%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.49e-01 100.0% 49.5%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.51 44.0 3.63e-01 100.0% 58.5%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.04e-01 100.0% 32.3%
3rbgD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.44e-01 100.0% 53.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4267139 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 56.0 5.38e-01 100.0% 73.7%
4969861 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 45.0 3.09e-01 100.0% 18.3%
3488420 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.68 46.0 3.79e-01 100.0% 37.9%
5024071 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 45.0 3.50e-01 82.0% 32.2%
3286798 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 47.0 3.60e-01 80.0% 83.2%
4979100 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 49.0 3.66e-01 84.0% 81.6%
4679597 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.63 51.0 4.34e-01 100.0% 95.8%
5074455 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.65e-01 84.0% 89.1%
3595628 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 47.0 3.71e-01 100.0% 41.0%
4010783 223.8.1.2 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.60 44.0 3.50e-01 82.0% 83.6%
4541933 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.59 43.0 3.17e-01 84.0% 68.8%
4980097 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.42e-01 84.0% 80.0%
4654177 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.59 46.0 3.11e-01 100.0% 19.6%
4187379 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.39e-01 82.0% 86.7%
5045803 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.37e-01 84.0% 72.1%
3948638 223.8.1.4 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.59 44.0 3.19e-01 84.0% 60.0%
3789849 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.32e-01 100.0% 73.3%
3978824 223.8.1.2 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.59 43.0 3.06e-01 82.0% 54.1%
3366242 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.58 50.0 3.69e-01 100.0% 97.9%
3236583 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 48.0 3.70e-01 100.0% 54.6%
3939165 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 3.84e-01 100.0% 51.3%
4236893 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.58 47.0 3.19e-01 100.0% 97.8%
3402927 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.57 48.0 3.22e-01 100.0% 23.3%
4010374 223.1.1.156 a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.57 42.0 3.30e-01 84.0% 80.0%
5071005 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 43.0 3.28e-01 84.0% 77.7%
3321290 11.1.1.902 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_GEX2_N 0.57 44.0 3.48e-01 100.0% 39.1%
3223796 304.112.1.15 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › HRDE1_NRDE3_N 0.57 47.0 3.64e-01 100.0% 88.8%
3848014 712.1.1.1 beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat 0.57 47.0 3.22e-01 100.0% 99.5%
4993747 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.57 47.0 3.85e-01 100.0% 49.0%
5051010 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 40.0 3.25e-01 88.0% 36.4%
3964245 3438.1.1.2 alpha arrays › Unknown function protein VPA0580 › Unknown function protein VPA0580 › Unknown function protein VPA0580 › DUF2322 0.56 46.0 3.79e-01 100.0% 81.9%
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 38.0 3.25e-01 84.0% 38.0%
4096596 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 40.0 2.37e-01 80.0% 22.4%
4427418 11.1.1.1229 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 0.55 47.0 3.88e-01 100.0% 69.5%
3701193 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.55 39.0 2.92e-01 82.0% 27.1%
4972248 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.11e-01 88.0% 32.3%
5048098 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.03e-01 86.0% 31.2%
4927680 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.46e-01 100.0% 40.0%
1513079 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.54 42.0 2.91e-01 100.0% 95.3%
4937354 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 40.0 3.90e-01 100.0% 73.3%
3749186 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.53 42.0 2.94e-01 100.0% 96.3%
3184475 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 2.94e-01 86.0% 28.7%
3787873 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.53 42.0 2.94e-01 100.0% 97.1%
3273537 3100.1.1.0 extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin 0.52 43.0 3.03e-01 100.0% 43.8%
5083763 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.42e-01 100.0% 45.2%
4335962 223.1.1.95 a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.52 37.0 2.96e-01 84.0% 81.5%
4945021 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 41.0 3.43e-01 100.0% 67.3%
3660917 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.51 40.0 2.79e-01 92.0% 68.8%
5071935 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 36.0 2.88e-01 82.0% 46.9%
4263644 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 2.82e-01 86.0% 29.7%
3440200 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.50 40.0 2.93e-01 98.0% 44.4%