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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00374
Bact-VirGOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00374
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-77
D2
high
residues 85-139
Domain cluster:
rep: IMGVR_UViG_3300035038_000097-3300035038-Ga0376512_01686_1489_1896__D79-130
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.83 | 75.0 | 6.26e-01 | 100.0% | 64.5% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.74 | 65.0 | 5.42e-01 | 100.0% | 60.0% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.65 | 57.0 | 5.16e-01 | 100.0% | 90.9% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.58 | 47.0 | 3.93e-01 | 90.9% | 51.6% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.58 | 46.0 | 4.33e-01 | 98.2% | 97.3% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 39.0 | 3.77e-01 | 85.5% | 60.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.84 | 76.0 | 6.14e-01 | 100.0% | 60.0% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 69.0 | 5.25e-01 | 100.0% | 49.2% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.75 | 66.0 | 6.65e-01 | 98.2% | 98.2% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 66.0 | 6.46e-01 | 100.0% | 98.3% |
| 4534931 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.73 | 46.0 | 4.10e-01 | 87.3% | 46.7% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 65.0 | 4.81e-01 | 100.0% | 43.6% |
| 3684646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 47.0 | 4.12e-01 | 89.1% | 46.3% |
| 5039871 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 59.0 | 3.71e-01 | 100.0% | 20.0% |
| 4982596 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.67 | 60.0 | 5.53e-01 | 100.0% | 100.0% |
| 3684567 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.66 | 46.0 | 4.35e-01 | 85.5% | 61.5% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.66 | 57.0 | 5.24e-01 | 100.0% | 97.3% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 53.0 | 4.78e-01 | 100.0% | 92.3% |
| 3407827 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 45.0 | 3.90e-01 | 90.9% | 50.6% |
| 3252347 | 4.1.1.224 ↗ | beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C | 0.60 | 48.0 | 4.56e-01 | 85.5% | 73.8% |
| 5035697 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 44.0 | 4.28e-01 | 85.5% | 96.9% |
| 1807495 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 35.0 | 3.53e-01 | 92.7% | 67.9% |
| 3389170 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.52 | 43.0 | 3.80e-01 | 100.0% | 61.2% |
| 5003882 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 37.0 | 3.02e-01 | 78.2% | 96.0% |
D3
high
residues 143-202
Domain cluster:
rep: S2_009_000_R2_scaffold_40_prodigal-single.1__X__X__00206__D195-250
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.65 | 54.0 | 4.75e-01 | 95.0% | 91.4% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.51 | 41.0 | 3.42e-01 | 98.3% | 77.2% |