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GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00378

Bact-Vir

GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00378

Identity

Kingdom:
phage

Quality

87.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-76
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b8mC01 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.53 38.0 2.94e-01 73.6% 88.1%
D2 high residues 85-181
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04865.20 best Baseplate_J 30.5 5.90e-07 89.7% 82.5%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 50.0 4.95e-01 93.8% 76.2%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 46.0 4.75e-01 97.9% 83.0%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 47.0 4.72e-01 96.9% 83.5%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 42.0 4.69e-01 87.6% 92.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 49.0 4.97e-01 100.0% 92.6%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 42.0 4.36e-01 90.7% 80.9%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 46.0 4.65e-01 96.9% 83.5%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 42.0 4.40e-01 90.7% 86.0%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 41.0 4.31e-01 88.7% 83.0%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.56 35.0 4.07e-01 92.8% 98.4%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 41.0 4.31e-01 87.6% 84.4%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 43.0 4.36e-01 96.9% 85.6%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.54 32.0 3.54e-01 71.1% 72.7%
1w9sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.75e-01 100.0% 59.7%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 3.88e-01 100.0% 58.1%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 4.15e-01 99.0% 91.6%
2wiqA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 45.0 3.57e-01 100.0% 78.2%
3qs2A00 2.60.40.3290 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial protein EcpA 0.52 43.0 3.66e-01 94.8% 76.9%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.48e-01 75.3% 89.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.85e-01 94.8% 93.2%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.40e-01 100.0% 52.6%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.50 40.0 3.87e-01 88.7% 82.5%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977754 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.91 77.0 7.80e-01 100.0% 89.5%
4957576 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.90 78.0 7.90e-01 99.0% 90.5%
4514735 1049.2.1.4 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.90 71.0 5.48e-01 100.0% 41.6%
4580145 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.85 65.0 6.95e-01 97.9% 90.6%
5002737 1.16.1.0 beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I 0.81 59.0 6.31e-01 100.0% 87.1%
1562394 1.1.8.6 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA 0.73 68.0 6.57e-01 100.0% 93.5%
3597932 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 55.0 5.59e-01 100.0% 93.7%
4932128 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.65 46.0 4.93e-01 92.8% 84.7%
4990285 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 49.0 5.13e-01 100.0% 89.9%
3415703 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 46.0 4.68e-01 92.8% 84.2%
4518149 1.1.13.59 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Beta-barrel_GLAA-B_II 0.59 47.0 4.77e-01 87.6% 92.6%
5022645 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 48.0 5.00e-01 100.0% 96.7%
1515984 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 47.0 4.65e-01 96.9% 84.0%
3493830 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.58 47.0 4.19e-01 100.0% 62.1%
4372404 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.57 50.0 4.95e-01 99.0% 94.0%
4230323 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.56 49.0 4.91e-01 100.0% 94.0%
5052170 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.56 50.0 4.81e-01 100.0% 87.3%
3829837 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.56 47.0 4.55e-01 94.8% 80.9%
3665168 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.56 50.0 4.67e-01 100.0% 91.7%
4176285 11.1.1.1032 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2544 0.55 48.0 4.35e-01 100.0% 95.6%
3670284 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 37.0 3.26e-01 70.1% 80.7%
4493656 10.32.1.13 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_17_28 0.54 47.0 3.78e-01 100.0% 50.7%
3276097 304.20.1.1 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.53 46.0 4.14e-01 99.0% 84.3%
3205251 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.53 45.0 4.31e-01 96.9% 99.1%
4049462 10.32.1.13 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_17_28 0.52 45.0 3.70e-01 100.0% 54.7%
5009692 11.4.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.51 43.0 4.28e-01 94.8% 98.1%
D3 high residues 366-464
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jv2A00 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 40.0 4.40e-01 96.0% 90.8%
6lkvA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 42.0 3.83e-01 82.8% 92.5%
2av5A00 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.54 38.0 3.81e-01 75.8% 93.4%
3e6qA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 43.0 4.03e-01 92.9% 96.8%
2fltA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 42.0 3.97e-01 88.9% 98.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957578 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.92 80.0 8.41e-01 100.0% 100.0%
3977755 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.85 70.0 7.47e-01 98.0% 100.0%
5002740 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.84 79.0 7.59e-01 100.0% 98.2%
5004557 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.84 78.0 7.50e-01 99.0% 99.1%
4093853 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.84 67.0 7.22e-01 99.0% 100.0%
3943567 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.82 75.0 7.52e-01 98.0% 100.0%
4565831 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.81 69.0 7.20e-01 99.0% 100.0%
3946544 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.75 68.0 6.74e-01 100.0% 97.1%
3313414 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.63 51.0 5.39e-01 98.0% 95.6%
3209734 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.60 49.0 5.04e-01 100.0% 95.8%
3754387 315.1.1.1 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF 0.59 42.0 3.93e-01 71.7% 95.0%
165655 229.1.1.1 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.59 40.0 4.40e-01 96.0% 90.8%
4639273 3117.1.1.1 a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ 0.54 48.0 4.48e-01 100.0% 82.4%
4105164 3117.1.1.1 a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ 0.54 46.0 4.13e-01 100.0% 86.7%
4928658 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.96e-01 78.8% 100.0%
4057010 3117.1.1.1 a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ 0.53 46.0 4.39e-01 100.0% 83.3%
3797376 101.1.2.589 alpha arrays › HTH › HTH › winged helix domain › DUF7516 0.53 39.0 3.66e-01 78.8% 80.0%
D4 medium residues 216-365
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.65 37.0 3.31e-01 92.7% 38.9%
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 40.0 3.81e-01 91.3% 54.7%
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 35.0 4.32e-01 74.0% 86.5%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.62 35.0 3.52e-01 78.7% 52.7%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 29.0 3.65e-01 100.0% 75.6%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 34.0 3.56e-01 70.0% 59.0%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 29.0 3.62e-01 100.0% 75.6%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 32.0 3.81e-01 79.3% 78.0%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 36.0 4.24e-01 93.3% 91.2%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 31.0 3.65e-01 100.0% 74.5%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 45.0 3.99e-01 93.3% 58.4%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 46.0 3.99e-01 93.3% 57.7%
2xq0A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.56 40.0 3.81e-01 91.3% 60.9%
4nehA05 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.53 41.0 3.89e-01 86.0% 69.1%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 3.51e-01 96.7% 63.0%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 32.0 3.03e-01 80.0% 52.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1614535 929.1.1.3 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C3 0.64 32.0 4.35e-01 79.3% 98.6%
4943486 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 37.0 3.98e-01 84.7% 68.0%
5071536 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 36.0 3.69e-01 84.7% 58.6%
5039890 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 43.0 4.38e-01 86.0% 72.7%
4280499 929.1.1.3 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C3 0.60 33.0 4.28e-01 78.7% 98.8%
5045374 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.58 42.0 3.86e-01 92.7% 57.9%
4412634 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 35.0 3.69e-01 85.3% 66.9%
1066946 11.1.5.8 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_3 0.58 43.0 4.10e-01 81.3% 67.6%
3598670 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.57 44.0 4.00e-01 93.3% 60.0%
1165730 10.20.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N_2 0.57 36.0 4.22e-01 89.3% 92.1%
4227844 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 34.0 3.64e-01 85.3% 68.8%
3973699 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.55 38.0 4.19e-01 80.0% 88.1%
3263196 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 35.0 3.43e-01 80.0% 60.0%
3544901 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.65e-01 84.0% 64.8%
3796384 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 36.0 3.95e-01 78.0% 83.2%
5046787 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 40.0 3.30e-01 78.7% 83.4%
4272976 5095.1.1.1 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.52 35.0 3.59e-01 96.0% 69.0%
3495353 221.13.1.1 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › DUF4140 0.51 40.0 4.11e-01 84.7% 86.4%
3792868 11.1.5.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 0.51 38.0 4.14e-01 80.0% 94.4%