←Back to structures

GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00432

Bact-Vir

GOV_bin_1711_contig-70_0_prodigal-single.1__X__X__00432

Identity

Kingdom:
phage

Quality

65.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-242
PDB
Domain cluster: rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00487__D19-147
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.68 49.0 5.19e-01 100.0% 84.1%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 29.0 3.59e-01 81.0% 70.7%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.57 25.0 3.13e-01 80.2% 65.2%
7vhqU01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.56 37.0 3.84e-01 90.1% 72.7%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 27.0 3.25e-01 77.7% 67.9%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.55 24.0 2.91e-01 77.7% 58.4%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 28.0 3.52e-01 78.5% 81.8%
6kd7A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 37.0 2.71e-01 74.4% 26.6%
4wk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 37.0 2.93e-01 96.7% 34.8%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 30.0 3.43e-01 85.1% 81.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4324528 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.62 34.0 4.16e-01 100.0% 84.0%
4649099 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.57 37.0 3.44e-01 90.1% 52.7%
3460576 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.55 27.0 2.10e-01 71.9% 19.2%
3203065 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.54 35.0 3.44e-01 100.0% 59.3%
3483890 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.54 37.0 3.36e-01 82.6% 52.5%
185111 3554.1.1.1 ↗ a+b duplicates or obligate multimers › protein of unknown function (eca1910) › protein of unknown function (eca1910) › protein of unknown function (eca1910) › DUF3861 0.52 34.0 3.92e-01 77.7% 93.1%
3282536 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 28.0 3.27e-01 77.7% 77.5%
3953439 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 28.0 3.51e-01 83.5% 91.4%
5057792 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.50 31.0 3.36e-01 86.8% 74.7%