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GP104

Euk-Vir

Caviid_betaherpesvirus_2

GP104__YP_007417870__Caviid_betaherpesvirus_2__33706

Identity

Accession:: YP_007417870 ↗
Protein ID:: GP104
Kingdom:: euk

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 84-165_188-235

PDB

Domain cluster: rep: capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359__D90-194_601-636

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	51.5	8.10e-14	73.1%	16.6%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vwaA00	1.20.58.1330	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein	0.61	39.0	4.30e-01	76.9%	82.8%
1abvA00	1.10.520.20	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase	0.60	40.0	4.33e-01	91.5%	81.9%
2fu2A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.60	31.0	3.91e-01	85.4%	83.3%
1v9vA01	1.20.1480.20	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like	0.59	38.0	4.37e-01	90.8%	89.5%
2lseA00	1.20.120.1360	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.58	32.0	3.60e-01	86.2%	68.3%
3f1xA01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.56	40.0	3.89e-01	74.6%	80.5%
4akgA08	1.10.472.130	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain	0.55	44.0	4.19e-01	90.0%	71.2%
1kn1B00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.54	44.0	4.09e-01	97.7%	70.2%
1sr2A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.52	34.0	3.58e-01	78.5%	74.1%
3zciA00	1.20.58.1660	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	45.0	3.96e-01	95.4%	89.5%
4f91B04	1.10.3380.10	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain	0.51	35.0	3.46e-01	100.0%	64.8%
3vw7A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	43.0	3.36e-01	90.8%	64.5%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3925909	371.1.1.0 ↗	few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2	0.67	45.0	5.02e-01	93.8%	89.0%
3909442	3236.1.1.1 ↗	alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger	0.66	56.0	3.82e-01	92.3%	41.3%
4827648	3236.1.1.1 ↗	alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger	0.65	54.0	4.23e-01	90.0%	70.0%
3602354	1030.1.1.1 ↗	alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A	0.57	38.0	3.96e-01	90.8%	72.5%
3925681	633.24.1.2 ↗	alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601	0.56	37.0	4.33e-01	83.1%	97.8%
3587218	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.54	44.0	4.48e-01	86.9%	89.2%
5025500	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.54	43.0	3.65e-01	86.9%	88.3%
4978800	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.53	37.0	3.02e-01	70.8%	71.9%
3436288	6155.1.1.1 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv	0.51	36.0	3.60e-01	70.8%	79.2%
3320417	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.51	35.0	3.75e-01	71.5%	84.3%
3275173	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	41.0	3.55e-01	90.0%	87.0%
3202941	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.50	36.0	3.77e-01	78.5%	82.6%

D2 medium residues 423-496

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	43.9	1.70e-11	100.0%	12.6%