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GP105

Euk-Vir

Caviid_betaherpesvirus_2

GP105__YP_007417871__Caviid_betaherpesvirus_2__33706

Identity

Accession:: YP_007417871 ↗
Protein ID:: GP105
Kingdom:: euk

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (90 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 340-407_850-907

PDB

Domain cluster: rep: helicase-primase_ATPase_subunit__YP_010087484__Phascolarctid_gammaherpesvirus_1__2249313__D338-366_706-759

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	84.6	6.50e-24	54.0%	8.0%
PF02689.21	Herpes_Helicase	81.0	7.60e-23	50.8%	7.4%

D2 medium residues 408-469_523-537_821-849

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__NP_045354__Bovine_alphaherpesvirus_1__10320__D392-469_736-760

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	57.7	8.80e-16	74.5%	10.3%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4djbA00	3.30.70.2870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3	0.57	49.0	4.77e-01	94.3%	93.2%
2jwnA01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.55	39.0	4.07e-01	94.3%	80.0%
1vq0A01	3.55.30.10	Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain	0.54	41.0	3.25e-01	81.1%	94.4%
1zv1A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.54	24.0	3.08e-01	76.4%	69.5%
2dt9A02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.53	38.0	4.23e-01	95.3%	100.0%
4r6uA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	36.0	3.66e-01	96.2%	72.8%
5flmA02	3.30.1360.140	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.52	37.0	3.47e-01	80.2%	58.8%
4i0kA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	36.0	3.78e-01	97.2%	81.1%
5ja2A01	3.30.559.30	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain	0.51	40.0	3.10e-01	85.8%	76.2%
3lnlB02	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	35.0	3.77e-01	93.4%	85.2%
1sqeA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	40.0	4.12e-01	94.3%	88.1%
3o4oB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	38.0	3.84e-01	96.2%	78.9%
6efyA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	36.0	3.75e-01	96.2%	80.6%
2di8A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	34.0	3.55e-01	98.1%	75.5%
7dluA03	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	36.0	4.02e-01	89.6%	100.0%
2yweA03	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.50	34.0	3.72e-01	93.4%	89.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3533153	5.1.3.254 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CATSPERB_Ig-like	0.52	40.0	3.93e-01	98.1%	76.5%
3851427	1.1.7.115 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CATSPERB_Ig-like	0.52	39.0	3.92e-01	98.1%	78.2%
3290564	4.1.1.292 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311	0.50	26.0	2.80e-01	95.3%	56.7%

D3 medium residues 538-614_698-746

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_004940266__Saimiriine_betaherpesvirus_4__1535247__D509-572_638-677

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	76.9	1.40e-21	66.7%	9.7%

D4 medium residues 747-820

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_009137079__Human_alphaherpesvirus_1__10298__D496-518_696-779

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	64.2	9.30e-18	100.0%	9.0%