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GP112

Euk-Vir

Caviid_betaherpesvirus_2

GP112__YP_007417872__Caviid_betaherpesvirus_2__33706

Identity

Accession:
YP_007417872 ↗
Protein ID:
GP112
Kingdom:
euk

Quality

61.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-146
PDB
Domain cluster: rep: U79_protein__YP_009253983__Macaca_nemestrina_herpesvirus_7__1846169__D2-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03064.22 best U79_P34 182.2 5.90e-54 97.9% 98.5%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.69 39.0 3.93e-01 100.0% 54.6%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.67 38.0 3.85e-01 100.0% 55.7%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.65 38.0 4.18e-01 100.0% 70.4%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 35.0 3.85e-01 100.0% 63.8%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 35.0 4.02e-01 98.6% 71.3%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 36.0 3.62e-01 99.3% 55.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 40.0 3.99e-01 100.0% 61.6%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 43.0 4.10e-01 99.3% 62.7%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 34.0 4.03e-01 100.0% 81.1%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 38.0 3.78e-01 100.0% 61.8%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 39.0 3.96e-01 100.0% 66.2%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 4.68e-01 87.9% 89.1%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.57 43.0 4.27e-01 99.3% 74.2%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 4.36e-01 100.0% 73.2%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 45.0 4.13e-01 87.2% 91.5%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.54 46.0 3.75e-01 89.4% 92.5%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 48.0 3.45e-01 96.5% 47.0%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 42.0 4.09e-01 100.0% 73.1%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.54 43.0 4.05e-01 92.9% 70.0%
2ztbA02 2.60.40.4280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 30.0 3.59e-01 100.0% 79.8%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 37.0 3.03e-01 70.2% 71.5%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 4.07e-01 100.0% 72.8%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 38.0 3.92e-01 100.0% 78.0%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 48.0 3.90e-01 96.5% 88.4%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 48.0 3.60e-01 100.0% 93.0%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 46.0 3.42e-01 95.0% 67.0%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.45e-01 87.2% 97.3%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.94e-01 80.9% 87.2%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.51 45.0 3.62e-01 96.5% 78.9%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.51 46.0 3.28e-01 96.5% 87.9%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 46.0 3.80e-01 97.9% 89.6%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.50 40.0 4.07e-01 88.7% 88.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062234 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.71 42.0 4.55e-01 100.0% 68.3%
4026594 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.70 39.0 4.30e-01 100.0% 66.1%
4027513 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.69 39.0 4.31e-01 98.6% 67.8%
3270919 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.68 38.0 4.13e-01 100.0% 66.1%
4370678 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.65 43.0 3.25e-01 99.3% 27.4%
3565845 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.65 38.0 4.07e-01 100.0% 65.3%
3292017 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.65 39.0 4.27e-01 100.0% 72.2%
3782242 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.65 38.0 4.29e-01 100.0% 74.5%
3931614 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.64 36.0 3.91e-01 100.0% 65.2%
4026208 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.64 36.0 3.92e-01 100.0% 65.2%
164598 331.15.1.1 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.64 35.0 4.02e-01 98.6% 71.3%
3599419 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.63 38.0 4.18e-01 100.0% 73.0%
2142704 331.15.1.1 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 0.63 35.0 4.17e-01 100.0% 79.2%
5034787 5084.5.3.17 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › DUF5916 0.63 48.0 3.28e-01 78.7% 95.4%
4281349 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.63 48.0 3.28e-01 78.0% 90.8%
4059480 881.1.1.37 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.62 41.0 3.79e-01 100.0% 53.1%
5030147 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 40.0 3.99e-01 100.0% 63.4%
3352272 331.9.1.2 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.61 34.0 3.71e-01 100.0% 65.2%
3945603 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.60 46.0 3.10e-01 78.0% 91.6%
5036898 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 38.0 3.82e-01 97.9% 62.5%
4329332 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.59 49.0 3.48e-01 87.2% 91.0%
4951451 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 39.0 3.95e-01 100.0% 65.5%
3284488 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 45.0 4.53e-01 99.3% 78.6%
3948040 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 49.0 3.69e-01 91.5% 77.4%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.57 42.0 4.34e-01 100.0% 80.0%
3639482 220.1.1.211 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.57 41.0 4.15e-01 83.0% 74.3%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.56 40.0 4.31e-01 89.4% 88.7%
4033933 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.56 43.0 4.75e-01 88.7% 100.0%
4602917 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.56 50.0 3.74e-01 95.0% 84.5%
420412 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.56 43.0 4.39e-01 99.3% 83.7%
3713198 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 34.0 3.36e-01 99.3% 54.8%
4652602 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.55 45.0 3.42e-01 85.8% 84.7%
3941948 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.55 46.0 3.52e-01 89.4% 93.9%
4318781 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.55 47.0 3.63e-01 92.9% 91.5%
3944680 5084.5.3.7 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › BCSC_C 0.55 46.0 3.33e-01 89.4% 91.5%
4437932 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 48.0 3.62e-01 94.3% 88.2%
4318843 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 42.0 4.18e-01 100.0% 77.9%
5004059 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 41.0 4.15e-01 99.3% 77.9%
3840002 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.54 44.0 4.06e-01 87.9% 95.6%
5047608 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.54 43.0 3.90e-01 85.8% 86.7%
4136508 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 49.0 3.65e-01 96.5% 76.4%
5009702 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 40.0 4.08e-01 100.0% 78.6%
4677412 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 48.0 3.64e-01 96.5% 80.3%
4331617 5084.1.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpW 0.53 44.0 4.04e-01 88.7% 91.9%
4278291 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 47.0 3.61e-01 95.7% 73.8%
4596124 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.53 41.0 3.94e-01 83.0% 87.9%
4339003 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 48.0 3.69e-01 96.5% 75.3%
4480962 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 47.0 3.67e-01 96.5% 79.7%
4345340 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 47.0 3.68e-01 96.5% 82.6%
4150627 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 47.0 3.58e-01 95.0% 74.7%
3978611 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 43.0 3.29e-01 86.5% 83.1%
3386238 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 46.0 3.49e-01 94.3% 91.3%
3387574 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.52 46.0 3.52e-01 94.3% 91.0%
4636176 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 46.0 3.53e-01 95.7% 74.2%
3977398 5084.1.1.16 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.52 42.0 4.08e-01 85.8% 88.1%
3407592 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.51 40.0 3.08e-01 92.2% 38.0%
None — 0.51 40.0 3.94e-01 80.9% 87.2%
885 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.51 45.0 3.62e-01 96.5% 78.9%
3351533 5084.5.1.23 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD 0.51 46.0 3.47e-01 95.7% 76.8%
4449332 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.51 45.0 3.38e-01 95.7% 97.1%
4356082 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.51 47.0 3.53e-01 100.0% 86.1%
4217278 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.51 45.0 3.45e-01 97.2% 76.9%
4116729 5084.1.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.51 41.0 3.93e-01 88.7% 83.5%
4521584 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.50 47.0 3.55e-01 100.0% 85.3%
4966099 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.50 43.0 4.09e-01 100.0% 78.8%