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GP115

Euk-Vir

Caviid_betaherpesvirus_2

GP115__YP_007417874__Caviid_betaherpesvirus_2__33706

Identity

Accession:
YP_007417874 ↗
Protein ID:
GP115
Kingdom:
euk

Quality

53.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-53_81-157
PDB
D2 high residues 163-242
PDB
Domain cluster: rep: E115__YP_007016506__Murid_betaherpesvirus_8__1261657__D174-248
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01801.22 best Cytomega_gL 50.3 2.90e-13 100.0% 35.5%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 4.54e-01 75.0% 85.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 43.0 3.62e-01 76.2% 71.8%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 4.32e-01 86.3% 87.1%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 50.0 3.88e-01 100.0% 94.4%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 40.0 3.41e-01 76.2% 85.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.45e-01 90.0% 95.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 35.0 2.76e-01 91.3% 32.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 38.0 3.10e-01 76.2% 89.2%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 37.0 2.57e-01 75.0% 84.9%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 39.0 2.85e-01 80.0% 31.9%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 44.0 2.95e-01 95.0% 40.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095505 1170.1.2.1 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Cytomega_gL 0.78 70.0 6.47e-01 100.0% 82.5%
3704604 4086.1.1.1 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.68 32.0 2.99e-01 92.5% 34.0%
4953347 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.64 34.0 4.01e-01 92.5% 78.0%
5054994 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 35.0 4.35e-01 95.0% 95.8%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.60 44.0 3.91e-01 77.5% 73.0%
4025734 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.59 44.0 3.28e-01 81.2% 84.9%
5006770 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.59 39.0 3.14e-01 83.7% 34.4%
3274683 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.58 51.0 3.43e-01 100.0% 67.8%
3173378 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.56 47.0 3.32e-01 100.0% 30.2%
3978190 375.1.1.311 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1062 0.56 38.0 3.65e-01 70.0% 81.1%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.60e-01 73.8% 73.3%
4001931 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.39e-01 76.2% 57.0%
3705431 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.30e-01 71.2% 97.4%
3592422 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 42.0 2.84e-01 90.0% 88.9%
3577471 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.53 39.0 3.35e-01 78.8% 97.7%
4927398 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 46.0 3.77e-01 100.0% 67.7%
3404964 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.52 40.0 3.57e-01 82.5% 99.1%
3228385 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 43.0 2.54e-01 90.0% 31.1%
4984757 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 31.0 2.99e-01 80.0% 52.2%
4934084 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.51 44.0 3.18e-01 95.0% 71.1%
3940020 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 36.0 3.09e-01 98.8% 46.2%
4001648 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 35.0 2.43e-01 73.8% 86.9%
3827046 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.51 38.0 3.62e-01 77.5% 70.0%
4029815 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.69e-01 96.2% 81.5%
3998298 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 39.0 2.93e-01 85.0% 35.7%