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GP24
Euk-VirCaviid_betaherpesvirus_2
GP24__YP_007417796__Caviid_betaherpesvirus_2__33706
Identity
- Accession:
- YP_007417796 ↗
- Protein ID:
- GP24
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Quwivirus›
Caviid_betaherpesvirus_2
TaxID: 33706
Cluster
View cluster (80 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 88-217
Domain cluster:
rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02393.22 best | US22 | 43.0 | 6.40e-11 | 81.5% | 83.1% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.68 | 39.0 | 4.70e-01 | 96.2% | 90.0% |
| 3d5pA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.60 | 53.0 | 5.30e-01 | 100.0% | 92.5% |
| 3ffvA00 | 3.40.1580.20 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein | 0.57 | 49.0 | 4.36e-01 | 91.5% | 92.3% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 40.0 | 3.92e-01 | 88.5% | 72.3% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 46.0 | 3.44e-01 | 94.6% | 99.4% |
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 46.0 | 4.17e-01 | 100.0% | 83.7% |
| 4q1vA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.52 | 40.0 | 2.76e-01 | 80.0% | 25.4% |
| 2w38A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 44.0 | 3.40e-01 | 96.9% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3185947 | 5.1.4.271 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 | 0.56 | 45.0 | 3.02e-01 | 86.2% | 91.7% |
| 5048686 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 37.0 | 3.77e-01 | 92.3% | 69.6% |
| 1289472 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.55 | 40.0 | 2.79e-01 | 75.4% | 27.6% |
| 4049822 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.53 | 42.0 | 2.93e-01 | 84.6% | 97.6% |
| 3349603 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.51 | 28.0 | 3.41e-01 | 73.1% | 84.6% |
D2
high
residues 233-371
Domain cluster:
rep: US22_family_homolog__YP_214055__Murid_betaherpesvirus_1__10366__D433-537
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02393.22 best | US22 | 59.1 | 6.40e-16 | 89.2% | 93.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 26.0 | 3.79e-01 | 76.3% | 96.2% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.56 | 21.0 | 3.33e-01 | 74.1% | 90.4% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 29.0 | 3.40e-01 | 85.6% | 70.7% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.54 | 23.0 | 3.42e-01 | 75.5% | 98.1% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 25.0 | 3.38e-01 | 84.9% | 92.1% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.53 | 41.0 | 3.91e-01 | 81.3% | 91.2% |
| 2prvA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.50 | 45.0 | 4.38e-01 | 97.1% | 90.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3427055 | 5.1.11.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd | 0.55 | 46.0 | 2.89e-01 | 90.6% | 50.9% |
| 3594793 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 40.0 | 3.08e-01 | 79.9% | 61.3% |
| 3715158 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.53 | 40.0 | 2.64e-01 | 80.6% | 26.6% |
| 3923688 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.51 | 47.0 | 3.33e-01 | 100.0% | 81.4% |
| 3480502 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.65e-01 | 83.5% | 20.7% |
| 3399544 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.51 | 41.0 | 3.18e-01 | 84.9% | 92.7% |
| 3485317 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 40.0 | 2.63e-01 | 83.5% | 20.3% |
| 3270014 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.51 | 44.0 | 3.10e-01 | 93.5% | 65.3% |