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GP25

Euk-Vir

Caviid_betaherpesvirus_2

GP25__YP_007417797__Caviid_betaherpesvirus_2__33706

Identity

Accession:: YP_007417797 ↗
Protein ID:: GP25
Kingdom:: euk

Quality

66.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 210-360

PDB

Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D247-382

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04637.17 best	Herpes_pp85	19.6	3.60e-04	98.0%	25.5%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d85C00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.60	35.0	3.78e-01	100.0%	66.2%
2iu5B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	31.0	2.93e-01	82.8%	41.2%
7watB02	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	42.0	3.32e-01	74.8%	90.3%
1m2oA04	1.20.120.730	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain	0.57	31.0	3.26e-01	86.8%	56.9%
2hfiA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.57	35.0	3.85e-01	85.4%	74.8%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.56	35.0	4.18e-01	80.1%	89.7%
6c1qB02	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	42.0	3.48e-01	80.1%	91.8%
1rj1A00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.55	41.0	4.14e-01	100.0%	79.1%
4gycA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	43.0	3.84e-01	86.8%	98.2%
5cy5B00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.53	41.0	4.12e-01	100.0%	80.5%
2hyjA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	31.0	3.21e-01	86.8%	58.5%
2b1eA04	1.20.1280.170	Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70	0.52	31.0	3.41e-01	81.5%	70.1%
6gyhA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	42.0	3.73e-01	86.1%	97.8%
3o7qA02	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.52	37.0	3.47e-01	100.0%	57.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1828346	1063.1.1.1 ↗	alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85	0.87	83.0	5.68e-01	100.0%	34.6%
4836806	1063.1.1.1 ↗	alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85	0.85	80.0	5.70e-01	100.0%	38.5%
4945373	5001.1.1.79 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YhhN	0.64	51.0	4.47e-01	83.4%	86.2%
3439705	3758.1.1.7 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1	0.58	44.0	3.89e-01	78.8%	74.5%
3256807	5001.1.1.80 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR	0.57	46.0	3.79e-01	86.1%	93.2%
4406277	3754.1.1.1 ↗	alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4	0.53	43.0	3.43e-01	86.8%	86.7%
3855618	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.53	42.0	3.42e-01	88.1%	88.4%
3919347	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.53	43.0	4.10e-01	87.4%	83.3%
3227429	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	42.0	3.32e-01	86.1%	88.4%
3663783	141.1.1.0 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases	0.52	39.0	3.13e-01	80.1%	93.3%
3923061	5001.1.1.106 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str	0.52	41.0	3.22e-01	85.4%	86.2%
3539560	5001.1.1.3 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2	0.51	40.0	3.36e-01	85.4%	89.3%
3484704	5001.1.1.111 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw	0.51	40.0	3.15e-01	85.4%	83.7%

D2 medium residues 132-193

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4f3lA02	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.55	46.0	3.79e-01	96.8%	91.7%
3v2bA00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.51	42.0	3.13e-01	95.2%	45.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1828346	1063.1.1.1 ↗	alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85	0.83	73.0	4.35e-01	100.0%	13.8%
4001387	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.53	46.0	3.49e-01	100.0%	75.6%

D3 medium residues 493-550

PDB