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GP28
Euk-VirCaviid_betaherpesvirus_2
GP28__YP_007417800__Caviid_betaherpesvirus_2__33706
Identity
- Accession:
- YP_007417800 ↗
- Protein ID:
- GP28
- Kingdom:
- euk
Quality
76.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Quwivirus›
Caviid_betaherpesvirus_2
TaxID: 33706
Cluster
View cluster (80 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-157
Domain cluster:
rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a6aB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.60 | 24.0 | 2.94e-01 | 75.2% | 53.9% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.58 | 36.0 | 3.98e-01 | 82.5% | 78.7% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 45.0 | 4.49e-01 | 95.6% | 80.9% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.56 | 39.0 | 3.37e-01 | 70.1% | 81.0% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.56 | 38.0 | 3.99e-01 | 70.1% | 80.3% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.55 | 27.0 | 2.62e-01 | 83.2% | 40.1% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 47.0 | 3.49e-01 | 95.6% | 93.2% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 27.0 | 3.32e-01 | 79.6% | 77.2% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 48.0 | 3.38e-01 | 100.0% | 97.2% |
| 3afcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 47.0 | 3.22e-01 | 97.1% | 92.9% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 47.0 | 3.20e-01 | 100.0% | 85.3% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.51 | 37.0 | 3.88e-01 | 78.1% | 81.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3511200 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.62 | 38.0 | 4.80e-01 | 93.4% | 100.0% |
| 4057824 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 43.0 | 4.41e-01 | 70.1% | 76.6% |
| 3898301 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.61 | 24.0 | 2.87e-01 | 73.0% | 49.5% |
| 3305583 | 5.1.5.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 | 0.58 | 44.0 | 3.15e-01 | 78.8% | 87.0% |
| 3169437 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 44.0 | 3.20e-01 | 79.6% | 51.5% |
| 4528716 | 3784.1.1.0 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related | 0.56 | 35.0 | 4.01e-01 | 73.7% | 82.9% |
| 3707788 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 43.0 | 3.57e-01 | 80.3% | 63.5% |
| 3167693 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 43.0 | 2.92e-01 | 83.9% | 30.0% |
| 3826506 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 41.0 | 3.25e-01 | 79.6% | 52.3% |
| 3347232 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 48.0 | 3.55e-01 | 99.3% | 90.3% |
| 3580534 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 45.0 | 3.42e-01 | 90.5% | 94.6% |
| 3255827 | 220.1.1.29 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 | 0.53 | 39.0 | 4.01e-01 | 89.8% | 78.5% |
| 3381414 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.52 | 42.0 | 4.05e-01 | 85.4% | 96.8% |
| 3666904 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.52 | 46.0 | 3.42e-01 | 94.2% | 94.2% |
| 3744900 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 41.0 | 3.17e-01 | 83.9% | 40.0% |
| 4215369 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.52 | 37.0 | 3.86e-01 | 91.2% | 80.8% |
| 3554889 | 5.1.3.251 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF28327 | 0.51 | 46.0 | 3.37e-01 | 97.8% | 97.2% |
| 4030728 | 5.1.4.661 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st | 0.51 | 46.0 | 3.41e-01 | 100.0% | 85.5% |
| 3617801 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 41.0 | 3.02e-01 | 86.1% | 41.2% |
| 3308887 | 5.1.3.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 | 0.50 | 43.0 | 3.13e-01 | 95.6% | 97.6% |
D2
high
residues 162-333
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b5uA03 | 3.10.380.10 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain | 0.61 | 33.0 | 4.19e-01 | 77.3% | 89.8% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 31.0 | 3.89e-01 | 86.6% | 92.3% |
| 3n4rA00 | 3.90.1150.80 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.52 | 28.0 | 3.70e-01 | 74.4% | 95.7% |
| 4dnuA00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.52 | 39.0 | 3.05e-01 | 78.5% | 95.7% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.50 | 23.0 | 2.39e-01 | 70.9% | 42.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254119 | 4205.1.1.3 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 | 0.55 | 41.0 | 3.94e-01 | 77.9% | 95.5% |
| 4432481 | 4205.1.1.1 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › Syd | 0.55 | 39.0 | 3.92e-01 | 73.3% | 99.4% |
| 2462317 | 4205.1.1.2 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C | 0.52 | 44.0 | 4.09e-01 | 90.7% | 98.6% |
| 3640593 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.50 | 40.0 | 3.06e-01 | 85.5% | 88.4% |