GP41

Euk-Vir

Pseudalatia_unipuncta_granulovirus

GP41__YP_003422464__Pseudalatia_unipuncta_granulovirus__36355

Identity

66.4 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Pseudalatia_unipuncta_granulovirus

TaxID: 36355

View cluster (31 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-68

PDB

D2 medium residues 123-175

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04700.18 best	Baculo_gp41	54.8	1.50e-14	100.0%	28.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6vg5A00	1.10.10.930	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.64	51.0	4.49e-01	88.7%	75.3%
1vw4L02	1.10.246.170	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.63	44.0	3.82e-01	75.5%	76.5%
2p6nA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.62	44.0	3.09e-01	73.6%	46.9%
3p0rA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.60	37.0	2.55e-01	75.5%	15.9%
1lujB01	1.10.10.490	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT	0.58	41.0	4.18e-01	79.2%	81.1%
2yvtA00	3.60.21.10	Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases	0.54	41.0	2.77e-01	92.5%	85.2%
1ym3A00	3.40.1050.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase	0.52	41.0	2.91e-01	94.3%	86.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3819026	109.4.1.1273 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3	0.61	50.0	3.41e-01	94.3%	62.0%
3477991	109.4.1.285 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSMD12-CSN4_N	0.59	49.0	3.19e-01	100.0%	51.4%
3580559	109.59.1.11 ↗	alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › TPR_IFT80_172	0.54	42.0	3.06e-01	92.5%	59.0%
3218368	109.4.1.1142 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IFT80_172	0.54	43.0	3.58e-01	92.5%	81.0%
3283857	876.1.1.0 ↗	a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin	0.52	38.0	3.35e-01	77.4%	62.5%

D3 medium residues 176-239

PDB

Domain cluster: rep: gp41__YP_009506030__Clostera_anastomosis_granulovirus_B__1986290__D157-237

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04700.18 best	Baculo_gp41	78.1	1.10e-21	98.4%	33.9%

D4 medium residues 240-290

PDB