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GP41
Euk-VirOperophtera_brumata_nucleopolyhedrovirus
GP41__YP_009552630__Operophtera_brumata_nucleopolyhedrovirus__1046267
Identity
- Accession:
- YP_009552630 ↗
- Protein ID:
- GP41
- Kingdom:
- euk
Quality
62.2
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Operophtera_brumata_nucleopolyhedrovirus
TaxID: 1046267
Cluster
View cluster (31 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 162-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04700.18 best | Baculo_gp41 | 77.0 | 2.30e-21 | 100.0% | 38.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3owaA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 42.0 | 3.43e-01 | 85.9% | 72.5% |
| 2r0rB00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.53 | 37.0 | 3.67e-01 | 73.2% | 85.9% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.52 | 41.0 | 3.47e-01 | 88.7% | 89.7% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.50 | 36.0 | 3.50e-01 | 81.7% | 67.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034237 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.53 | 41.0 | 3.56e-01 | 98.6% | 53.0% |
| 4258985 | 4229.1.1.2 ↗ | alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase | 0.51 | 42.0 | 2.77e-01 | 97.2% | 49.9% |
D2
medium
residues 86-126
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04700.18 best | Baculo_gp41 | 42.6 | 8.00e-11 | 100.0% | 22.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x0jA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.70 | 50.0 | 3.36e-01 | 75.6% | 32.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036826 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.74 | 55.0 | 4.43e-01 | 85.4% | 41.2% |
| 3527852 | 389.1.1.180 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › C8-3_MUC4 | 0.69 | 58.0 | 5.91e-01 | 95.1% | 100.0% |
| 4340567 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.63 | 55.0 | 3.19e-01 | 100.0% | 54.0% |
| 3936655 | 109.4.1.436 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nipped-B_C | 0.62 | 55.0 | 3.36e-01 | 100.0% | 40.0% |
| None | — | 0.62 | 45.0 | 2.74e-01 | 82.9% | 12.4% |