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GP41

Euk-Vir

Lonomia_obliqua_multiple_nucleopolyhedrovirus

GP41__YP_009666427__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394

Identity

Accession:
YP_009666427 ↗
Protein ID:
GP41
Kingdom:
euk

Quality

56.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lonomia_obliqua_multiple_nucleopolyhedrovirus

TaxID: 134394

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 208-272
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04700.18 best Baculo_gp41 72.1 7.60e-20 100.0% 29.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.70 49.0 4.02e-01 73.8% 81.9%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.62e-01 84.6% 58.1%
3vpxB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 51.0 3.61e-01 84.6% 93.0%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 53.0 4.19e-01 92.3% 83.9%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.63 44.0 3.26e-01 72.3% 72.8%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 46.0 4.27e-01 78.5% 96.2%
2zj2A04 1.10.3380.20 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.61 49.0 3.71e-01 89.2% 79.0%
5xjnA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 51.0 3.16e-01 95.4% 72.2%
4iw9A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 45.0 3.73e-01 78.5% 70.8%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 49.0 3.38e-01 100.0% 31.6%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 50.0 3.88e-01 100.0% 54.4%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 2.87e-01 84.6% 33.6%
2bd0A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 44.0 2.98e-01 90.8% 55.1%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.53 39.0 4.01e-01 78.5% 100.0%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.53 40.0 4.10e-01 84.6% 100.0%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.52 41.0 3.33e-01 89.2% 62.8%
5c9gA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.52 34.0 3.64e-01 72.3% 78.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3996096 109.4.1.590 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1 0.81 50.0 3.28e-01 72.3% 16.7%
4949105 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.78 51.0 4.20e-01 90.8% 38.3%
3296177 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.69 42.0 3.97e-01 70.8% 50.0%
3668758 3826.1.1.57 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › 2TM_P5A-ATPase 0.69 49.0 5.09e-01 86.2% 80.0%
3281450 5086.1.1.183 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LysE 0.68 55.0 4.30e-01 86.2% 66.9%
3802251 605.8.1.9 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › 2TM_P5A-ATPase 0.68 48.0 5.03e-01 86.2% 80.0%
4144335 304.48.1.24 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DUF1744 0.68 50.0 3.30e-01 78.5% 55.0%
3659411 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.67 50.0 4.15e-01 78.5% 86.4%
3590175 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.66 55.0 3.69e-01 93.8% 90.4%
3452356 103.1.1.34 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.66 55.0 4.48e-01 92.3% 98.3%
2732318 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.63 54.0 4.77e-01 95.4% 69.1%
3961186 103.9.1.0 ↗ alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain 0.63 53.0 4.55e-01 92.3% 84.0%
4958657 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.61 51.0 3.84e-01 90.8% 94.8%
4587004 148.1.1.1 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone 0.61 54.0 4.71e-01 98.5% 66.0%
3870376 194.1.1.3 ↗ alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › ECM1 0.60 48.0 3.78e-01 86.2% 65.2%
3832740 3567.1.1.16 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › DUF4110 0.60 45.0 4.11e-01 84.6% 61.1%
3361883 1205.2.1.1 ↗ a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.54 48.0 4.22e-01 96.9% 85.3%
3582216 109.4.1.353 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N 0.53 46.0 2.81e-01 95.4% 30.8%
3271238 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 42.0 3.00e-01 87.7% 69.7%