GP52

Euk-Vir

Caviid_betaherpesvirus_2

GP52__YP_007417827__Caviid_betaherpesvirus_2__33706

Identity

83.2 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 263-408

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	72.8	4.20e-20	71.9%	14.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qxzA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.50	23.0	3.31e-01	93.8%	100.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3998355	190.1.1.25 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135	0.52	23.0	3.22e-01	76.0%	84.3%

D2 medium residues 409-526

PDB

Domain cluster: rep: putative_major_envelope_glycoprotein__YP_009042048__Bovine_gammaherpesvirus_6__1504288__D178-216_344-465

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	108.7	5.40e-31	99.2%	21.5%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4m0mA03	1.20.1270.430	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.57	35.0	4.08e-01	81.4%	89.9%
2khqA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.55	33.0	3.48e-01	94.1%	65.7%
2kj8A00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.55	32.0	3.30e-01	94.1%	56.8%
3n71A03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	38.0	3.13e-01	97.5%	40.4%
2keyA00	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.53	32.0	3.28e-01	94.9%	60.7%
3efoB01	1.20.120.730	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain	0.51	34.0	3.15e-01	74.6%	52.3%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3786347	632.10.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Coronavirus NSP7-like › Coronavirus NSP7-like	0.61	37.0	4.41e-01	89.0%	93.3%
3835496	3791.1.1.1 ↗	alpha arrays › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1_EP	0.61	44.0	3.53e-01	75.4%	80.0%
3926289	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.57	40.0	2.54e-01	72.0%	77.0%
3216038	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.56	33.0	3.55e-01	84.7%	68.0%
3587366	186.1.1.5 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3	0.54	32.0	3.41e-01	94.1%	66.0%
3474226	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.54	44.0	4.18e-01	86.4%	90.0%
3762235	108.1.1.8 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100	0.52	26.0	2.72e-01	71.2%	49.5%
4160719	6102.1.1.1 ↗	alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA	0.51	40.0	3.65e-01	83.9%	63.7%