←Back to structures

GP56

Euk-Vir

Caviid_betaherpesvirus_2

GP56__YP_007417831__Caviid_betaherpesvirus_2__33706

Identity

Accession:: YP_007417831 ↗
Protein ID:: GP56
Kingdom:: euk

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 136-147_175-227_482-509

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	59.0	3.60e-16	60.2%	7.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zhgA00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.60	36.0	3.35e-01	100.0%	46.3%
2xepB02	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.51	38.0	2.87e-01	80.6%	68.8%

D2 medium residues 228-263_311-355

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__NP_612700__Panine_betaherpesvirus_2__188763__D230-266_319-361

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zxqA06	1.20.1270.70	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle	0.74	52.0	5.68e-01	74.1%	89.4%
1binA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.71	52.0	4.33e-01	77.8%	63.6%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.67	52.0	4.64e-01	85.2%	81.4%
1v4aA03	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.62	47.0	3.90e-01	84.0%	61.4%
3wnvA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.53	40.0	3.29e-01	79.0%	86.7%
7wntA02	3.10.20.580	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.51	34.0	3.51e-01	86.4%	70.5%
1ornA01	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.51	35.0	3.17e-01	70.4%	54.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3583793	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.72	60.0	5.16e-01	92.6%	64.6%
5046289	192.5.1.0 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat	0.69	54.0	4.58e-01	82.7%	84.6%
3462011	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.68	55.0	5.45e-01	85.2%	84.7%
4934264	604.39.1.6 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT	0.65	53.0	4.14e-01	90.1%	64.4%
3517291	192.29.1.24 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237	0.65	44.0	3.44e-01	70.4%	60.6%
3367799	605.4.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein	0.61	47.0	4.55e-01	85.2%	82.1%
4234162	633.31.1.0 ↗	alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	0.59	38.0	3.97e-01	81.5%	74.3%
3939470	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.54	38.0	3.92e-01	74.1%	80.0%
3940915	2484.1.1.20 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1	0.51	40.0	2.82e-01	84.0%	49.6%

D3 medium residues 264-310_356-407

PDB

D4 medium residues 510-535_642-698

PDB

Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697

D5 medium residues 536-641

PDB

Domain cluster: rep: orf7__YP_009044394__Alcelaphine_gammaherpesvirus_2__138184__D511-616

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	124.1	7.10e-36	84.9%	13.6%