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GP5_protein
Euk-VirDeBrazzas_monkey_arterivirus
GP5_protein__YP_009121781__DeBrazzas_monkey_arterivirus__1965063
Identity
- Accession:
- YP_009121781 ↗
- Protein ID:
- GP5_protein
- Kingdom:
- euk
Quality
57.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Nidovirales›
Arteriviridae›
Iotaarterivirus›
DeBrazza's_monkey_arterivirus
TaxID: 1965063
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 207-257
Domain cluster:
rep: GP5_protein__YP_009551708__Rodent_arterivirus__1806636__D145-189
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00951.24 best | Arteri_Gl | 47.0 | 3.90e-12 | 100.0% | 27.9% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 46.0 | 4.32e-01 | 80.4% | 69.7% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 50.0 | 4.68e-01 | 94.1% | 77.3% |
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.59 | 40.0 | 3.72e-01 | 82.4% | 54.7% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 49.0 | 3.81e-01 | 100.0% | 77.3% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 49.0 | 4.04e-01 | 100.0% | 60.4% |
| 2gy5A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.85e-01 | 94.1% | 57.6% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.89e-01 | 78.4% | 86.2% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 47.0 | 3.70e-01 | 100.0% | 63.2% |
| 2dl9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 3.76e-01 | 94.1% | 65.2% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.53 | 39.0 | 3.66e-01 | 88.2% | 62.1% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 42.0 | 3.94e-01 | 94.1% | 89.2% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 41.0 | 3.96e-01 | 86.3% | 100.0% |
| 4m8mA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.36e-01 | 100.0% | 81.5% |
| 4bsoA00 | 2.10.220.10 | Mainly Beta › Ribbon › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 | 0.51 | 35.0 | 2.88e-01 | 100.0% | 38.1% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 35.0 | 3.40e-01 | 74.5% | 78.0% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.50 | 40.0 | 3.60e-01 | 94.1% | 76.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031509 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 45.0 | 4.38e-01 | 78.4% | 76.7% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.59 | 48.0 | 4.13e-01 | 92.2% | 67.1% |
| 3953959 | 4.1.1.424 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29823 | 0.58 | 39.0 | 3.97e-01 | 72.5% | 100.0% |
| 4930532 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 46.0 | 3.49e-01 | 94.1% | 62.7% |
| 3730011 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.57 | 43.0 | 3.14e-01 | 82.4% | 62.9% |
| 5077562 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.56 | 41.0 | 3.85e-01 | 90.2% | 70.7% |
| 3551782 | 11.1.1.317 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_Ig-like | 0.56 | 45.0 | 3.72e-01 | 94.1% | 57.0% |
| 3314684 | 10.10.1.5 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 | 0.56 | 48.0 | 3.47e-01 | 100.0% | 81.9% |
| 5019693 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.55 | 41.0 | 4.14e-01 | 82.4% | 98.0% |
| 154312 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.54 | 42.0 | 3.90e-01 | 94.1% | 82.9% |
| 632 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.52 | 39.0 | 3.46e-01 | 90.2% | 66.3% |
| 3040112 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.51 | 33.0 | 3.39e-01 | 84.3% | 70.0% |
| 4886908 | 4167.1.1.1 ↗ | beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 | 0.50 | 38.0 | 3.72e-01 | 92.2% | 92.1% |
D2
medium
residues 83-204