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GP5_protein
Euk-VirRodent_arterivirus
GP5_protein__YP_009551708__Rodent_arterivirus__1806636
Identity
- Accession:
- YP_009551708 ↗
- Protein ID:
- GP5_protein
- Kingdom:
- euk
Quality
64.3
mean pLDDT
Taxonomy
TaxID: 1806636
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-143
D2
medium
residues 145-189
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00951.24 best | Arteri_Gl | 32.7 | 9.10e-08 | 100.0% | 25.1% |
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 53.0 | 4.78e-01 | 95.6% | 71.2% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 49.0 | 4.51e-01 | 91.1% | 69.7% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 49.0 | 4.81e-01 | 86.7% | 89.8% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 53.0 | 4.00e-01 | 100.0% | 57.1% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.61 | 47.0 | 4.69e-01 | 88.9% | 100.0% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 50.0 | 3.77e-01 | 100.0% | 51.6% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 52.0 | 3.64e-01 | 100.0% | 55.1% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 46.0 | 2.64e-01 | 100.0% | 8.1% |
| 4jonC00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.60 | 49.0 | 3.71e-01 | 95.6% | 83.1% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.60 | 50.0 | 3.56e-01 | 95.6% | 46.5% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 48.0 | 3.71e-01 | 100.0% | 53.8% |
| 1djsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 3.92e-01 | 100.0% | 55.9% |
| 1t9mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 48.0 | 3.24e-01 | 100.0% | 31.4% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 47.0 | 3.40e-01 | 97.8% | 30.6% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 42.0 | 3.27e-01 | 97.8% | 33.7% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.58 | 45.0 | 3.74e-01 | 100.0% | 46.5% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 48.0 | 3.68e-01 | 100.0% | 58.1% |
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.58 | 45.0 | 4.48e-01 | 100.0% | 84.8% |
| 1fo0B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 48.0 | 3.71e-01 | 100.0% | 67.0% |
| 2olgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 47.0 | 3.55e-01 | 100.0% | 58.9% |
| 2i02A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 3.44e-01 | 100.0% | 44.3% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 47.0 | 3.41e-01 | 100.0% | 45.5% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 46.0 | 3.46e-01 | 100.0% | 51.9% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 46.0 | 3.34e-01 | 100.0% | 41.6% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 47.0 | 3.26e-01 | 100.0% | 59.8% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 47.0 | 3.81e-01 | 100.0% | 54.2% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 46.0 | 3.15e-01 | 100.0% | 35.1% |
| 4iauA01 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.56 | 48.0 | 4.09e-01 | 100.0% | 82.1% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 38.0 | 3.36e-01 | 73.3% | 74.0% |
| 1lktA00 | 2.170.14.10 | Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain | 0.56 | 41.0 | 3.40e-01 | 100.0% | 39.4% |
| 2dl9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 3.88e-01 | 100.0% | 61.8% |
| 1rfeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 45.0 | 3.35e-01 | 100.0% | 49.3% |
| 2gy5A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 3.75e-01 | 100.0% | 56.6% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.56 | 42.0 | 3.80e-01 | 97.8% | 57.6% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.54 | 44.0 | 4.38e-01 | 95.6% | 89.8% |
| 6bs6A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 3.43e-01 | 100.0% | 44.0% |
| 2orzA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 42.0 | 3.02e-01 | 95.6% | 56.5% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 39.0 | 3.64e-01 | 88.9% | 76.9% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 44.0 | 4.30e-01 | 97.8% | 94.0% |
| 1mgpA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 3.01e-01 | 97.8% | 47.1% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 3.70e-01 | 88.9% | 94.3% |
| 1hskA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 40.0 | 3.01e-01 | 93.3% | 72.4% |
| 5y4mA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 40.0 | 2.93e-01 | 95.6% | 56.7% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.51 | 39.0 | 3.55e-01 | 100.0% | 71.4% |
| 2yvsA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 41.0 | 3.10e-01 | 93.3% | 86.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3232582 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 4.10e-01 | 93.3% | 60.0% |
| 4931996 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.62 | 51.0 | 3.80e-01 | 100.0% | 46.6% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.62 | 50.0 | 5.05e-01 | 95.6% | 100.0% |
| 5010420 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.61 | 53.0 | 4.05e-01 | 100.0% | 62.0% |
| 4949945 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 50.0 | 3.71e-01 | 100.0% | 51.5% |
| 3536857 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 52.0 | 3.57e-01 | 100.0% | 44.8% |
| 3603738 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.60 | 51.0 | 3.64e-01 | 95.6% | 45.7% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.60 | 52.0 | 4.28e-01 | 100.0% | 64.7% |
| 5077562 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.60 | 47.0 | 4.22e-01 | 100.0% | 70.7% |
| 5047765 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 49.0 | 3.72e-01 | 100.0% | 51.2% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.59 | 47.0 | 4.79e-01 | 95.6% | 100.0% |
| 3314684 | 10.10.1.5 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 | 0.59 | 50.0 | 3.53e-01 | 100.0% | 77.4% |
| 4424877 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.59 | 48.0 | 3.34e-01 | 100.0% | 35.8% |
| 4994372 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.59 | 48.0 | 3.64e-01 | 95.6% | 45.0% |
| 3285863 | 375.1.1.49 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RbpA | 0.58 | 45.0 | 3.60e-01 | 100.0% | 40.0% |
| 3387649 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 47.0 | 3.51e-01 | 100.0% | 47.4% |
| 3346140 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 44.0 | 3.52e-01 | 97.8% | 41.1% |
| 2706608 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.57 | 46.0 | 3.53e-01 | 100.0% | 51.6% |
| 4565837 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.57 | 44.0 | 3.72e-01 | 97.8% | 83.2% |
| 4937158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 48.0 | 4.42e-01 | 95.6% | 75.0% |
| 4493573 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.57 | 43.0 | 3.02e-01 | 97.8% | 51.5% |
| 3730011 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.56 | 48.0 | 3.39e-01 | 95.6% | 41.4% |
| 4949072 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 46.0 | 3.36e-01 | 100.0% | 46.2% |
| 1886098 | 4076.2.1.1 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH | 0.56 | 42.0 | 3.80e-01 | 97.8% | 57.6% |
| 4026937 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 3.65e-01 | 100.0% | 60.0% |
| 4993851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 45.0 | 4.54e-01 | 93.3% | 100.0% |
| 154312 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.55 | 43.0 | 3.93e-01 | 97.8% | 74.3% |
| 3572785 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.55 | 46.0 | 3.33e-01 | 95.6% | 34.6% |
| 5032809 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.54 | 41.0 | 3.21e-01 | 95.6% | 53.1% |
| 4982454 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.54 | 44.0 | 4.10e-01 | 95.6% | 88.3% |
| 5026915 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 44.0 | 4.31e-01 | 95.6% | 94.0% |
| 4592324 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.53 | 45.0 | 3.69e-01 | 100.0% | 62.2% |
| 4971396 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 44.0 | 4.21e-01 | 97.8% | 89.1% |
| 5018908 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 39.0 | 3.06e-01 | 100.0% | 48.1% |
| 3590514 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.52 | 41.0 | 3.95e-01 | 95.6% | 96.4% |
| 4886908 | 4167.1.1.1 ↗ | beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 | 0.52 | 40.0 | 3.80e-01 | 100.0% | 93.7% |
| 4990900 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.35e-01 | 97.8% | 56.0% |
| 3878165 | 375.1.1.136 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EHMT1-2_CRR | 0.50 | 39.0 | 3.72e-01 | 91.1% | 74.5% |
| 1173366 | 217.1.1.0 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain | 0.50 | 41.0 | 3.10e-01 | 93.3% | 86.0% |
| 4161673 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.50 | 38.0 | 3.32e-01 | 93.3% | 57.6% |