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GP80
Euk-VirCaviid_betaherpesvirus_2
GP80__YP_007417846__Caviid_betaherpesvirus_2__33706
Identity
- Accession:
- YP_007417846 ↗
- Protein ID:
- GP80
- Kingdom:
- euk
Quality
52.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Quwivirus›
Caviid_betaherpesvirus_2
TaxID: 33706
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-124_149-245
Domain cluster:
rep: capsid_maturation_protease__YP_009176911__Testudinid_alphaherpesvirus_3__2560801__D5-223
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00716.23 best | Peptidase_S21 | 176.0 | 2.50e-51 | 92.1% | 59.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cmvB00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.97 | 85.0 | 8.77e-01 | 100.0% | 93.2% |
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.90 | 82.0 | 8.25e-01 | 100.0% | 93.5% |
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.88 | 84.0 | 8.31e-01 | 100.0% | 94.2% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 28.0 | 4.45e-01 | 72.7% | 94.2% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.59 | 26.0 | 3.80e-01 | 74.1% | 95.5% |
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 27.0 | 3.83e-01 | 98.6% | 99.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1304358 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.96 | 88.0 | 8.76e-01 | 100.0% | 90.5% |
| 788 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.90 | 82.0 | 8.25e-01 | 100.0% | 93.5% |
| 27577 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.89 | 87.0 | 8.44e-01 | 100.0% | 94.8% |
| 3958771 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.71 | 31.0 | 4.18e-01 | 100.0% | 75.0% |
| 3289705 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.70 | 31.0 | 3.83e-01 | 98.6% | 64.3% |
| 3955063 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.70 | 31.0 | 3.84e-01 | 98.6% | 63.4% |
| 3286366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.70 | 31.0 | 3.91e-01 | 98.1% | 67.4% |
| 3953574 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.70 | 31.0 | 3.83e-01 | 98.1% | 65.0% |
| 3277706 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.70 | 31.0 | 3.90e-01 | 98.6% | 65.7% |
| 3959024 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.70 | 30.0 | 4.35e-01 | 98.6% | 84.8% |
| 3288888 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.69 | 30.0 | 3.83e-01 | 98.6% | 65.9% |
| 3290618 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.69 | 31.0 | 3.83e-01 | 98.6% | 65.7% |
| 3957231 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.69 | 31.0 | 4.32e-01 | 98.6% | 83.6% |
| 3290923 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 30.0 | 3.78e-01 | 98.6% | 65.9% |
| 3957158 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 30.0 | 4.29e-01 | 98.6% | 84.8% |
| 3956379 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 31.0 | 3.74e-01 | 98.6% | 62.0% |
| 3959560 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.68 | 31.0 | 4.36e-01 | 98.6% | 85.5% |
| 3282819 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.67 | 30.0 | 3.75e-01 | 98.6% | 65.7% |
| 1933303 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.66 | 42.0 | 4.75e-01 | 94.9% | 81.9% |
| 3952336 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.65 | 31.0 | 3.74e-01 | 96.3% | 65.3% |
| 3943528 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.65 | 32.0 | 4.32e-01 | 100.0% | 86.7% |
| 3284857 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.65 | 32.0 | 3.78e-01 | 99.5% | 66.7% |
| 4913412 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.62 | 29.0 | 3.81e-01 | 92.6% | 76.8% |
| 3982061 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.61 | 32.0 | 4.17e-01 | 100.0% | 87.2% |
| 3282344 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.61 | 29.0 | 4.12e-01 | 98.6% | 96.0% |
| 4970211 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.59 | 29.0 | 4.08e-01 | 100.0% | 95.2% |
| 3543605 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.59 | 32.0 | 4.30e-01 | 81.9% | 95.8% |
| 3866917 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.59 | 35.0 | 4.41e-01 | 77.8% | 96.9% |
| 4026390 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 28.0 | 3.48e-01 | 84.3% | 73.3% |
| 3883294 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.56 | 33.0 | 4.10e-01 | 98.6% | 93.8% |
| 4939612 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.56 | 30.0 | 3.94e-01 | 79.2% | 94.8% |
| 3844655 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.56 | 31.0 | 3.99e-01 | 77.3% | 95.0% |
| 4355727 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.53 | 29.0 | 3.57e-01 | 94.4% | 82.1% |
| 4927706 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.52 | 25.0 | 3.60e-01 | 79.2% | 99.0% |
| 3953977 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.51 | 26.0 | 3.45e-01 | 82.9% | 87.5% |
| 5004549 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.51 | 26.0 | 3.52e-01 | 81.0% | 96.3% |