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GP88

Euk-Vir

Caviid_betaherpesvirus_2

GP88__YP_007417855__Caviid_betaherpesvirus_2__33706

Identity

Accession:
YP_007417855 ↗
Protein ID:
GP88
Kingdom:
euk

Quality

60.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-188
PDB
D2 high residues 238-310
PDB
D3 high residues 322-422
PDB
Domain cluster: rep: E88__YP_007016485__Murid_betaherpesvirus_8__1261657__D330-411
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04529.18 best Herpes_U59 51.6 1.10e-13 100.0% 27.7%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qelA01 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.63 33.0 2.94e-01 71.3% 33.1%
5z7cA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 43.0 3.63e-01 75.2% 98.3%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 30.0 3.47e-01 83.2% 71.2%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 39.0 2.90e-01 71.3% 70.8%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 3.92e-01 100.0% 48.7%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.56 46.0 4.07e-01 90.1% 84.3%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.55 38.0 4.33e-01 89.1% 100.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.55 43.0 4.36e-01 84.2% 96.9%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.55 37.0 3.30e-01 70.3% 58.5%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.54 38.0 3.70e-01 72.3% 85.5%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 37.0 3.63e-01 71.3% 85.7%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.54 34.0 3.90e-01 74.3% 87.8%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 45.0 4.08e-01 89.1% 72.0%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 37.0 3.78e-01 73.3% 96.0%
2jswA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.51 42.0 3.44e-01 90.1% 61.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4637177 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.78 38.0 2.54e-01 83.2% 13.6%
5033498 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 31.0 4.11e-01 71.3% 96.0%
4593104 141.1.1.5 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › TRI5 0.61 43.0 3.04e-01 72.3% 58.7%
3992442 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.60 41.0 4.42e-01 71.3% 91.8%
4401012 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.58 31.0 3.69e-01 77.2% 83.3%
3295695 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.57 34.0 2.58e-01 85.1% 22.7%
4318044 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.57 41.0 4.30e-01 85.1% 84.4%
3796397 7022.1.1.0 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein 0.56 40.0 3.07e-01 73.3% 95.2%
4565984 148.1.3.4 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.55 38.0 3.90e-01 72.3% 88.0%
3465065 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 31.0 3.44e-01 83.2% 70.7%
3789515 101.1.1.10 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ARID 0.53 37.0 3.37e-01 73.3% 69.3%
5004434 3558.1.1.0 ↗ alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain 0.53 31.0 2.98e-01 100.0% 47.5%
3175191 627.1.1.1 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.53 43.0 3.58e-01 86.1% 95.3%
4010524 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.52 41.0 3.01e-01 84.2% 50.2%
4164573 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 37.0 3.55e-01 75.2% 78.3%