GP89

Euk-Vir

Caviid_betaherpesvirus_2

GP89__YP_007417856__Caviid_betaherpesvirus_2__33706

Identity

74.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Quwivirus› Caviid_betaherpesvirus_2

TaxID: 33706

View cluster (63 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 443-604_644-668

PDB

Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	226.7	6.70e-67	87.2%	46.4%

D2 medium residues 110-202

PDB

Domain cluster: rep: putative_terminase__YP_009344911__Murine_roseolovirus__1940555__D119-184

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	90.4	2.20e-25	100.0%	32.8%

D3 medium residues 203-363

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03237.22 best	Terminase_6N	37.2	3.50e-09	87.0%	64.2%
PF02500.23	DNA_pack_N	165.8	2.30e-48	59.6%	36.2%
PF02499.23	DNA_pack_C	42.7	5.60e-11	24.8%	11.4%

D4 medium residues 364-422

PDB

D5 medium residues 423-442_605-643

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_1__YP_004940252__Saimiriine_betaherpesvirus_4__1535247__D425-441_605-646

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	39.9	4.00e-10	71.2%	10.8%