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GP98
Euk-VirCaviid_betaherpesvirus_2
GP98__YP_007417864__Caviid_betaherpesvirus_2__33706
Identity
- Accession:
- YP_007417864 ↗
- Protein ID:
- GP98
- Kingdom:
- euk
Quality
80.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Quwivirus›
Caviid_betaherpesvirus_2
TaxID: 33706
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-187
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 43.1 | 3.50e-11 | 96.2% | 23.9% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 45.0 | 3.42e-01 | 75.2% | 46.7% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 41.0 | 4.69e-01 | 77.4% | 90.0% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 42.0 | 3.26e-01 | 72.2% | 50.8% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.57 | 31.0 | 3.62e-01 | 100.0% | 73.9% |
| 5bn3A04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.56 | 40.0 | 3.97e-01 | 76.7% | 71.2% |
| 1cy5A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 34.0 | 3.89e-01 | 75.9% | 88.0% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 29.0 | 3.47e-01 | 100.0% | 78.3% |
| 3pf0A00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.54 | 48.0 | 3.68e-01 | 100.0% | 98.7% |
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 35.0 | 4.04e-01 | 76.7% | 95.7% |
| 7zcvA02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 34.0 | 2.96e-01 | 100.0% | 40.5% |
| 7m2wE01 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.51 | 43.0 | 3.34e-01 | 94.0% | 65.8% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957614 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 40.0 | 3.40e-01 | 82.7% | 92.4% |
D2
medium
residues 219-310_365-400_457-582
Domain cluster:
rep: deoxyribonuclease__YP_443858__Papiine_alphaherpesvirus_2__340907__D355-603
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 106.0 | 2.90e-30 | 62.2% | 33.4% |
| PF01771.24 | Viral_alk_exo | 85.9 | 3.50e-24 | 35.8% | 18.7% |
D3
medium
residues 311-364_442-456
Domain cluster:
rep: deoxyribonuclease__YP_009253975__Macaca_nemestrina_herpesvirus_7__1846169__D254-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01771.24 best | Viral_alk_exo | 38.8 | 6.90e-10 | 89.9% | 10.4% |