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GQ357915.1__ACV50083.1__X__00060

Bact-Vir

GQ357915.1__ACV50083.1__X__00060

Identity

Accession:
GQ357915 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-85
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.80 57.0 3.26e-01 100.0% 7.8%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.78 55.0 3.65e-01 75.6% 47.5%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.77 67.0 4.84e-01 100.0% 51.9%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.76 53.0 3.51e-01 73.3% 47.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.76 62.0 4.32e-01 100.0% 29.3%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.76 58.0 4.64e-01 100.0% 41.5%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.76 52.0 4.28e-01 88.9% 39.8%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.75 50.0 2.98e-01 93.3% 10.2%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.74 63.0 4.62e-01 100.0% 51.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 63.0 4.32e-01 100.0% 30.2%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.70 59.0 3.98e-01 100.0% 43.6%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.70 60.0 3.69e-01 100.0% 44.8%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.68 58.0 3.73e-01 100.0% 89.4%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.68 57.0 3.80e-01 100.0% 45.6%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 56.0 4.06e-01 100.0% 38.2%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.67 54.0 4.07e-01 95.6% 54.1%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.66 53.0 3.72e-01 88.9% 35.0%
2r9yA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 56.0 3.97e-01 100.0% 59.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.23e-01 97.8% 46.0%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 59.0 4.51e-01 100.0% 70.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 52.0 3.16e-01 100.0% 13.7%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.65 52.0 3.71e-01 100.0% 30.3%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 55.0 3.95e-01 100.0% 65.0%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 50.0 3.55e-01 95.6% 27.1%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.63 54.0 3.65e-01 100.0% 61.3%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 52.0 4.23e-01 93.3% 76.1%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.76e-01 100.0% 67.7%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.62 49.0 3.35e-01 100.0% 22.6%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 3.42e-01 88.9% 41.6%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.62 54.0 4.34e-01 100.0% 52.8%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 51.0 3.25e-01 100.0% 44.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.61 52.0 4.07e-01 100.0% 50.0%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 51.0 3.22e-01 100.0% 39.1%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.61 51.0 3.49e-01 100.0% 37.9%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 52.0 3.03e-01 100.0% 37.5%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 42.0 2.84e-01 95.6% 16.6%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 49.0 3.46e-01 100.0% 52.5%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.59 52.0 3.61e-01 97.8% 38.1%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 40.0 3.14e-01 82.2% 31.7%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.62e-01 82.2% 66.3%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.58 48.0 3.73e-01 100.0% 70.5%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 47.0 2.96e-01 97.8% 35.5%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.57 45.0 3.14e-01 95.6% 67.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 44.0 2.65e-01 100.0% 50.2%
2a6hC03 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.56 47.0 3.21e-01 100.0% 36.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 34.0 3.35e-01 82.2% 51.9%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.39e-01 100.0% 91.1%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.30e-01 93.3% 81.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 2.85e-01 88.9% 25.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.85e-01 97.8% 66.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.89e-01 97.8% 67.6%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 41.0 3.06e-01 97.8% 31.4%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 40.0 3.02e-01 93.3% 48.9%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.38e-01 97.8% 71.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989855 706.2.1.8 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › CFSR 0.81 58.0 4.93e-01 75.6% 48.6%
4929797 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.81 62.0 5.71e-01 100.0% 64.4%
3742051 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.79 61.0 3.59e-01 100.0% 11.2%
3179728 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.78 60.0 3.52e-01 100.0% 10.5%
2841854 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.78 66.0 4.80e-01 100.0% 51.5%
3231481 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.77 62.0 3.92e-01 100.0% 18.6%
6518 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.77 66.0 4.82e-01 100.0% 51.9%
4955091 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.76 59.0 3.70e-01 100.0% 16.2%
3248667 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.76 61.0 3.99e-01 100.0% 21.1%
3404297 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.75 58.0 5.52e-01 100.0% 70.9%
3389939 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.75 61.0 4.07e-01 100.0% 23.3%
3995339 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 59.0 4.11e-01 100.0% 27.3%
4648495 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.72 58.0 3.57e-01 100.0% 15.4%
3267039 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.70 56.0 3.75e-01 97.8% 22.2%
5007818 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.69 59.0 3.72e-01 100.0% 72.2%
3276895 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 60.0 3.43e-01 100.0% 10.8%
4014654 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.69 61.0 4.28e-01 100.0% 91.4%
3958695 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.68 50.0 3.53e-01 100.0% 23.7%
4929578 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.68 55.0 4.03e-01 100.0% 34.2%
4191828 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.67 58.0 3.26e-01 100.0% 12.6%
3210163 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.67 58.0 3.33e-01 100.0% 11.4%
4015968 633.33.1.1 alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz 0.66 48.0 3.05e-01 84.4% 14.5%
3930546 5.1.4.90 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.66 53.0 3.16e-01 100.0% 11.5%
None 0.65 56.0 3.29e-01 100.0% 12.6%
3624447 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 58.0 4.29e-01 100.0% 46.4%
3785140 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.12e-01 100.0% 36.8%
5019486 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.65 49.0 3.75e-01 100.0% 33.3%
3211478 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 58.0 4.18e-01 100.0% 41.7%
3436557 220.4.1.8 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.64 57.0 4.80e-01 100.0% 69.3%
3815584 11.1.1.89 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1223 0.63 55.0 3.99e-01 100.0% 75.4%
1147343 243.1.1.38 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › BACOVA_00961-like 0.63 50.0 3.55e-01 95.6% 27.1%
3934453 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.63 55.0 4.09e-01 100.0% 48.7%
4890223 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 53.0 3.17e-01 100.0% 25.8%
3832530 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 52.0 3.12e-01 100.0% 13.0%
4026002 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 51.0 3.05e-01 100.0% 12.8%
3597599 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 54.0 4.17e-01 100.0% 49.0%
4098414 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.61 54.0 3.51e-01 100.0% 31.8%
3386873 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.61 54.0 3.49e-01 100.0% 33.0%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.64e-01 97.8% 72.3%
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.60 52.0 3.85e-01 100.0% 48.3%
3599019 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 50.0 3.85e-01 100.0% 40.9%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.40e-01 97.8% 67.1%
3211396 5.1.4.167 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.59 48.0 2.85e-01 100.0% 11.7%
3960946 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.59 49.0 3.49e-01 100.0% 67.1%
3839768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 44.0 2.66e-01 84.4% 10.6%
3490456 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 3.59e-01 100.0% 36.6%
3236929 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 45.0 2.96e-01 86.7% 19.5%
3416381 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.58 49.0 2.94e-01 100.0% 12.3%
3636503 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 48.0 4.27e-01 97.8% 67.1%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.87e-01 86.7% 55.7%
3166879 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 47.0 4.30e-01 97.8% 72.3%
4041376 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 47.0 3.93e-01 100.0% 58.7%
3928430 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.53 43.0 3.89e-01 100.0% 64.3%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.07e-01 97.8% 87.8%