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GQ357915.1__ACV50143.1__X__00120

Bact-Vir

GQ357915.1__ACV50143.1__X__00120

Identity

Accession:
GQ357915 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.69 47.0 3.49e-01 72.1% 89.2%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 40.0 3.88e-01 100.0% 51.3%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.64 57.0 5.28e-01 100.0% 97.7%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.61 45.0 3.13e-01 77.9% 33.3%
3w5nA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 42.0 3.13e-01 100.0% 29.9%
1osyA00 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.59 42.0 3.59e-01 100.0% 45.6%
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.44e-01 77.9% 40.5%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 3.53e-01 100.0% 42.6%
3eoeD01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.58 42.0 3.39e-01 77.9% 43.8%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.57 49.0 3.73e-01 100.0% 86.0%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 50.0 3.60e-01 100.0% 36.6%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.56 37.0 3.91e-01 94.1% 78.0%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.46e-01 100.0% 47.0%
4qmfD02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 44.0 4.04e-01 89.7% 75.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 42.0 4.02e-01 85.3% 84.1%
5bxhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 36.0 3.22e-01 91.2% 48.5%
2wshA00 3.40.1440.40 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.52 43.0 3.49e-01 100.0% 47.0%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 35.0 3.59e-01 95.6% 73.4%
4rvcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.65e-01 80.9% 26.2%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.51 41.0 3.10e-01 89.7% 56.9%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.84e-01 91.2% 97.6%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.41e-01 82.4% 91.7%
4g1uD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 2.87e-01 94.1% 63.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929359 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.71 62.0 5.39e-01 100.0% 74.3%
4944923 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 48.0 3.96e-01 86.8% 50.8%
2579422 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.61 47.0 4.23e-01 100.0% 60.6%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.66e-01 85.3% 48.1%
3087848 11.11.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Fungal immunomodulatory protein, FIP › Fungal immunomodulatory protein, FIP › Fve 0.58 41.0 3.57e-01 100.0% 47.3%
3546356 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.58 46.0 3.81e-01 91.2% 87.7%
3650746 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.56 49.0 3.09e-01 100.0% 33.1%
3249306 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.77e-01 92.6% 56.8%
4350613 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.56 40.0 3.57e-01 76.5% 97.1%
197596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.23e-01 91.2% 83.5%
3562629 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.55 42.0 3.67e-01 91.2% 87.5%
3330365 2003.1.5.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.55 43.0 3.33e-01 88.2% 84.7%
4007720 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.85e-01 95.6% 72.0%
3410285 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.53 46.0 3.55e-01 100.0% 91.5%
4238754 223.3.1.7 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Glutaminase 0.53 42.0 3.32e-01 91.2% 69.7%
5065158 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.30e-01 89.7% 81.3%
4528689 304.48.1.91 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › PF29796 0.52 40.0 3.19e-01 85.3% 74.0%
4091593 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 3.46e-01 92.6% 94.3%
5050269 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 4.12e-01 86.8% 100.0%
3743609 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.51 40.0 3.10e-01 91.2% 79.9%
4965236 101.1.2.952 alpha arrays › HTH › HTH › winged helix domain › PF29290 0.51 38.0 3.98e-01 95.6% 95.0%
D2 high residues 85-132
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f0cA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 45.0 4.49e-01 93.8% 67.3%
2c5sA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.67 52.0 3.54e-01 100.0% 24.3%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 52.0 4.22e-01 97.9% 96.0%
3di1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 52.0 3.29e-01 100.0% 84.5%
3h4oA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.62 50.0 3.58e-01 100.0% 47.4%
3spdA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.62 46.0 3.06e-01 100.0% 20.0%
3gygC02 3.30.70.1410 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › yhjk (haloacid dehalogenase-like hydrolase protein) domain 0.61 50.0 4.39e-01 97.9% 100.0%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.61 52.0 4.20e-01 100.0% 56.0%
1biqA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 48.0 2.95e-01 93.8% 36.8%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 50.0 3.55e-01 100.0% 85.5%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.58 46.0 4.19e-01 95.8% 64.2%
8cdaB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 50.0 3.53e-01 100.0% 80.5%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.57 49.0 4.00e-01 100.0% 77.7%
1jp4A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 47.0 3.31e-01 100.0% 50.3%
4j8lA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 44.0 2.97e-01 100.0% 62.9%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.46e-01 100.0% 58.9%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 46.0 3.05e-01 100.0% 38.2%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.53 43.0 4.03e-01 100.0% 77.3%
1vefA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.15e-01 100.0% 32.4%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 43.0 3.16e-01 100.0% 39.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3357520 310.2.1.28 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.74 59.0 4.89e-01 100.0% 50.6%
3653085 2488.1.1.18 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW 0.70 58.0 3.63e-01 100.0% 16.2%
3437890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 4.79e-01 100.0% 53.4%
3173752 2002.1.1.192 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.68 58.0 3.24e-01 97.9% 65.6%
None 0.68 57.0 3.22e-01 100.0% 8.4%
3278865 142.3.1.0 alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.67 56.0 5.15e-01 100.0% 75.4%
3469386 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.65 55.0 3.62e-01 100.0% 22.3%
3218679 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 45.0 3.92e-01 79.2% 51.2%
3413139 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.62 41.0 2.53e-01 70.8% 95.6%
None 0.60 47.0 2.73e-01 83.3% 92.8%
3707113 109.6.1.1 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.60 50.0 3.12e-01 100.0% 64.7%
None 0.60 52.0 3.23e-01 100.0% 21.8%
None 0.59 48.0 3.57e-01 100.0% 35.2%
3992934 3964.1.1.1 beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.57 43.0 3.95e-01 87.5% 61.5%
3407025 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.57 50.0 2.99e-01 100.0% 48.3%
3629068 2.1.1.92 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_D_N 0.57 48.0 3.44e-01 100.0% 67.1%
3394655 603.1.1.104 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.56 45.0 2.86e-01 100.0% 38.5%
3967023 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.55 47.0 3.01e-01 100.0% 57.6%
3578099 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.55 40.0 3.87e-01 79.2% 90.9%
5042767 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.37e-01 85.4% 41.8%
4312324 605.1.1.306 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF30649 0.54 40.0 3.44e-01 83.3% 50.7%
None 0.54 44.0 2.76e-01 100.0% 18.8%
3295046 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.54 43.0 3.23e-01 89.6% 36.0%
4011272 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 41.0 3.23e-01 83.3% 60.0%
3658936 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 3.09e-01 100.0% 35.6%
3431509 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 3.09e-01 100.0% 63.8%
3364683 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.54 42.0 3.45e-01 89.6% 46.7%
3416265 603.1.1.104 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.53 45.0 2.69e-01 100.0% 43.8%
3518542 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 46.0 3.15e-01 100.0% 27.8%
None 0.53 43.0 2.67e-01 100.0% 18.2%
3330076 540.1.1.1 few secondary structure elements › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › Cytochrome c oxidase subunit h › COX6B 0.53 39.0 3.22e-01 83.3% 44.2%
None 0.53 42.0 2.36e-01 100.0% 6.5%
3410018 603.1.1.104 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.53 44.0 2.64e-01 95.8% 45.9%
5052522 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.52 43.0 2.83e-01 100.0% 19.6%
4057677 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.52 42.0 3.47e-01 87.5% 81.2%
3459020 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 2.66e-01 100.0% 17.6%
4337722 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.52 38.0 3.16e-01 79.2% 77.6%
3371875 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 2.62e-01 100.0% 18.1%
4988993 5086.1.1.231 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook 0.51 42.0 3.05e-01 97.9% 99.3%
3466458 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 42.0 2.90e-01 100.0% 33.3%
3682402 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.37e-01 95.8% 8.5%