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GQ421471.1__ACV41102.1__Xfas53_gene02__00002

Bact-Vir

GQ421471.1__ACV41102.1__Xfas53_gene02__00002

Identity

Accession:
GQ421471 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xylella_phage_Xfas53

TaxID: 670252

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-82
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13986.12 best DUF4224 39.9 4.50e-10 67.2% 97.8%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q4aA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.65 50.0 3.19e-01 82.1% 33.3%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 43.0 3.68e-01 74.6% 55.0%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.61 38.0 3.95e-01 70.1% 66.7%
1yavB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 43.0 3.45e-01 74.6% 88.9%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.60 42.0 3.71e-01 76.1% 66.7%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 42.0 3.02e-01 76.1% 27.7%
3ajdA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.59 39.0 4.05e-01 71.6% 75.0%
3jckC00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 41.0 2.59e-01 76.1% 13.2%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 39.0 3.76e-01 77.6% 61.3%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.58 40.0 3.29e-01 73.1% 39.7%
1g6sA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.58 39.0 2.86e-01 71.6% 35.8%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.57 43.0 2.99e-01 82.1% 69.6%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 42.0 3.53e-01 80.6% 62.8%
2pjsA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 3.50e-01 76.1% 54.9%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 38.0 2.64e-01 74.6% 27.3%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.99e-01 79.1% 79.4%
7ewfB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.83e-01 79.1% 78.7%
3g1wA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 2.97e-01 74.6% 71.0%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 39.0 3.82e-01 80.6% 100.0%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.52e-01 76.1% 68.1%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.51e-01 73.1% 68.1%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.61e-01 71.6% 76.6%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 2.97e-01 76.1% 39.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.35e-01 79.1% 52.0%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 35.0 3.57e-01 73.1% 74.6%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 37.0 3.21e-01 79.1% 76.1%
3zi1A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 3.12e-01 80.6% 93.0%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.45e-01 77.6% 63.4%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.23e-01 91.0% 68.1%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 35.0 3.06e-01 76.1% 50.0%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.50 33.0 2.65e-01 73.1% 31.3%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.65e-01 82.1% 79.5%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3675645 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.01e-01 76.1% 54.8%
4995013 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 46.0 4.33e-01 77.6% 60.7%
3930811 101.1.2.122 ↗ alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.64 40.0 4.77e-01 71.6% 95.6%
5082561 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.64 45.0 5.03e-01 74.6% 98.0%
2168161 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.63 45.0 4.81e-01 77.6% 89.5%
5023789 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 42.0 3.85e-01 74.6% 54.1%
3620006 109.4.1.142 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.63 45.0 3.10e-01 82.1% 20.4%
4992437 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 44.0 4.65e-01 79.1% 86.7%
5064906 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.61 44.0 4.78e-01 76.1% 94.5%
4933561 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.61 44.0 4.79e-01 77.6% 96.4%
4527553 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.60 42.0 4.44e-01 73.1% 89.1%
139679 101.1.9.21 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.60 42.0 3.71e-01 76.1% 66.7%
4198222 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.59 42.0 4.21e-01 76.1% 75.7%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.59 44.0 3.66e-01 82.1% 64.0%
3954861 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 40.0 4.23e-01 71.6% 87.3%
4994568 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.59 42.0 4.55e-01 76.1% 94.5%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.59 42.0 3.61e-01 76.1% 63.6%
3741091 101.1.2.69 ↗ alpha arrays › HTH › HTH › winged helix domain › La 0.58 42.0 3.86e-01 79.1% 60.0%
3290900 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.58 42.0 3.43e-01 76.1% 40.8%
3593170 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.98e-01 77.6% 66.7%
4034325 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.58 41.0 3.40e-01 74.6% 41.6%
3945289 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.58 42.0 3.50e-01 79.1% 62.4%
4668445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.57 39.0 4.23e-01 73.1% 89.1%
3943951 101.1.9.45 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.57 41.0 4.14e-01 76.1% 78.5%
3958148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 42.0 3.43e-01 80.6% 57.8%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.57 41.0 3.59e-01 77.6% 49.5%
4668740 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 40.0 3.52e-01 76.1% 50.5%
3599746 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.91e-01 80.6% 70.6%
3387245 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.56 39.0 3.17e-01 73.1% 37.8%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.56 40.0 4.24e-01 76.1% 94.5%
3715642 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.56 41.0 3.99e-01 79.1% 70.7%
3621329 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.56 41.0 3.67e-01 77.6% 54.7%
4504812 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.56 41.0 3.86e-01 80.6% 94.1%
3980161 101.1.9.45 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.56 39.0 4.17e-01 76.1% 94.5%
3786690 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.17e-01 85.1% 37.8%
4197446 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.56 39.0 3.18e-01 74.6% 38.5%
4031948 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.55 41.0 3.54e-01 82.1% 65.2%
4117490 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.55 39.0 3.19e-01 76.1% 40.8%
3707832 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.54e-01 79.1% 73.0%
3282255 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.54 39.0 3.43e-01 77.6% 65.7%
3941467 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.54 40.0 3.86e-01 80.6% 92.5%
4927940 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.54 39.0 2.54e-01 77.6% 18.0%
4672676 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.54 42.0 3.45e-01 91.0% 64.3%
3518903 101.1.2.416 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.53 38.0 3.56e-01 79.1% 71.1%
2665492 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.53 39.0 3.23e-01 83.6% 61.9%
2774953 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.53 42.0 3.91e-01 89.6% 70.1%
3611590 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.56e-01 80.6% 68.9%
4017767 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.28e-01 77.6% 50.0%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.52 41.0 3.82e-01 89.6% 91.1%
4959921 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.51e-01 79.1% 61.2%
3282573 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.52 39.0 3.29e-01 83.6% 66.4%
1844183 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.52 39.0 3.16e-01 80.6% 59.8%
3341667 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.52 38.0 3.60e-01 82.1% 62.4%
4126330 101.1.9.33 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536 0.52 36.0 2.94e-01 76.1% 37.9%
4536234 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.51 39.0 3.33e-01 83.6% 69.6%
3259230 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.51 38.0 3.43e-01 83.6% 72.0%
3179612 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 35.0 3.53e-01 74.6% 75.7%
4998317 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 40.0 2.82e-01 89.6% 74.9%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.50 37.0 3.22e-01 82.1% 66.1%
4951929 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.50 34.0 3.41e-01 74.6% 66.7%