Back to structures

GQ478082.1__ACZ63786.1__X__00026

Bact-Vir

GQ478082.1__ACZ63786.1__X__00026

Identity

Accession:
GQ478082 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-90
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 46.0 7.40e-12 98.4% 50.8%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.87 74.0 7.05e-01 96.9% 79.5%
2nyyA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.73 62.0 4.44e-01 96.9% 98.5%
3v0aB04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 59.0 4.50e-01 96.9% 99.4%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.71e-01 85.9% 67.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 4.74e-01 100.0% 61.5%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.66e-01 85.9% 65.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.82e-01 79.7% 98.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.48e-01 79.7% 81.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.62 46.0 4.22e-01 82.8% 72.2%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 4.08e-01 79.7% 79.6%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 44.0 3.99e-01 79.7% 97.9%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.61 43.0 4.20e-01 78.1% 91.9%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 45.0 2.97e-01 81.2% 87.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 5.07e-01 93.8% 92.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.42e-01 79.7% 100.0%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 41.0 3.61e-01 75.0% 77.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.77e-01 95.3% 94.9%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 43.0 2.78e-01 81.2% 77.5%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 3.86e-01 100.0% 83.6%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.48e-01 78.1% 85.5%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.15e-01 90.6% 60.3%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.32e-01 78.1% 77.9%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.44e-01 79.7% 88.6%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 45.0 3.89e-01 93.8% 89.5%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.59e-01 90.6% 75.0%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.56 46.0 3.83e-01 95.3% 65.6%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 39.0 2.42e-01 76.6% 11.7%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.62e-01 92.2% 76.1%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.98e-01 93.8% 95.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.46e-01 81.2% 72.6%
4qi3A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.56 44.0 3.22e-01 92.2% 67.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.35e-01 84.4% 75.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 39.0 4.14e-01 82.8% 94.2%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.49e-01 92.2% 72.3%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.66e-01 96.9% 48.3%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 43.0 2.77e-01 92.2% 79.2%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.93e-01 95.3% 96.6%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.31e-01 100.0% 75.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.29e-01 100.0% 98.2%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 36.0 3.44e-01 71.9% 71.2%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.92e-01 100.0% 88.2%
6jt6A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.53 44.0 3.24e-01 96.9% 68.7%
5j9bA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 37.0 2.89e-01 76.6% 88.3%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 36.0 2.60e-01 100.0% 23.8%
2fgtA02 3.10.450.310 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.59e-01 79.7% 97.6%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 42.0 3.43e-01 100.0% 95.1%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.95e-01 90.6% 73.2%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 39.0 2.64e-01 84.4% 88.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.52e-01 70.3% 73.8%
7zghA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 37.0 2.36e-01 81.2% 74.2%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.44e-01 84.4% 98.9%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 41.0 2.63e-01 92.2% 22.8%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.50 37.0 3.00e-01 85.9% 86.9%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.50 36.0 3.65e-01 76.6% 83.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.73 60.0 5.31e-01 95.3% 62.2%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.72 58.0 6.24e-01 96.9% 100.0%
4659299 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.24e-01 82.8% 85.0%
4017127 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 50.0 3.28e-01 79.7% 92.9%
3820064 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.67 52.0 4.78e-01 84.4% 66.3%
3592540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.64e-01 96.9% 95.0%
3256498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.56e-01 95.3% 98.2%
3393297 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 55.0 5.10e-01 90.6% 76.2%
3397846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.55e-01 92.2% 98.2%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 55.0 4.87e-01 90.6% 68.9%
3304627 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 52.0 5.53e-01 85.9% 100.0%
3624441 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.65 52.0 4.01e-01 85.9% 40.0%
3778257 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.65 53.0 4.06e-01 87.5% 40.7%
3518475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.02e-01 89.1% 78.6%
3523979 604.12.1.118 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.65 48.0 4.95e-01 79.7% 83.3%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.24e-01 100.0% 91.7%
3024572 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.64 51.0 4.03e-01 85.9% 43.1%
2831843 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.21e-01 85.9% 51.9%
3622137 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 53.0 4.74e-01 90.6% 65.6%
4947399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.19e-01 81.2% 80.0%
3855972 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.63 50.0 4.99e-01 100.0% 83.1%
3502290 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.21e-01 95.3% 93.3%
5048797 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 46.0 4.11e-01 81.2% 87.4%
3193891 511.1.1.2 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 0.62 48.0 3.73e-01 87.5% 98.1%
3507338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.24e-01 90.6% 95.0%
3533318 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 43.0 4.78e-01 76.6% 94.0%
3622389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.03e-01 89.1% 87.7%
3592335 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 50.0 3.17e-01 92.2% 78.3%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.61 44.0 3.94e-01 81.2% 71.0%
3627177 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.61 43.0 2.74e-01 76.6% 20.9%
3710203 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.01e-01 93.8% 46.8%
3227515 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 51.0 4.13e-01 98.4% 98.4%
4994580 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 45.0 2.74e-01 82.8% 85.4%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.35e-01 92.2% 73.3%
3935130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.96e-01 100.0% 100.0%
3880816 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.59 48.0 3.59e-01 92.2% 60.6%
3360657 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.59 45.0 3.82e-01 87.5% 93.9%
4131958 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.58 46.0 3.74e-01 90.6% 100.0%
3219131 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 47.0 3.75e-01 90.6% 95.6%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 46.0 4.50e-01 92.2% 93.2%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 50.0 4.49e-01 98.4% 77.8%
3179238 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.58 43.0 3.19e-01 81.2% 42.8%
3200361 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 46.0 3.54e-01 90.6% 69.0%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.44e-01 92.2% 93.2%
5079197 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.57 39.0 4.25e-01 87.5% 92.0%
3868320 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.57 43.0 4.33e-01 100.0% 83.1%
3731318 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.56 43.0 3.27e-01 85.9% 97.0%
4993189 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 40.0 4.16e-01 79.7% 93.3%
3171838 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.56 43.0 2.61e-01 85.9% 67.7%
4568248 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.56 45.0 2.75e-01 93.8% 22.3%
4259069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.24e-01 92.2% 30.0%
3849240 10.1.1.9 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.55 43.0 3.25e-01 90.6% 57.2%
5052825 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 44.0 3.86e-01 92.2% 85.7%
4082096 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.55 42.0 3.34e-01 85.9% 81.4%
5002677 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.55e-01 96.9% 83.4%
3912572 5.1.5.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N,DPPIV_rep 0.54 39.0 2.41e-01 81.2% 39.0%
3593734 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.68e-01 85.9% 70.8%
3200493 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 36.0 3.86e-01 76.6% 83.6%
4147605 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.53 40.0 2.77e-01 84.4% 94.0%
3401269 10.1.1.5 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.53 43.0 2.94e-01 92.2% 42.3%
3641797 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.53 39.0 3.73e-01 82.8% 90.0%
3939638 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.53 39.0 3.36e-01 82.8% 86.0%
3168104 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.52 41.0 2.39e-01 90.6% 69.0%
3832069 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 35.0 3.52e-01 70.3% 76.9%
4952059 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.51 37.0 3.57e-01 81.2% 70.0%
4014168 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 2.82e-01 100.0% 34.5%
3998402 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 41.0 3.70e-01 93.8% 86.2%
4052768 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.51 41.0 3.26e-01 93.8% 56.0%
3330259 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 40.0 2.75e-01 93.8% 96.1%
3791839 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 41.0 3.93e-01 96.9% 78.8%