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GQ866233.1__ACX80283.1__D11S_2210__00003

Bact-Vir

GQ866233.1__ACX80283.1__D11S_2210__00003

Identity

Accession:
GQ866233 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aggregatibacter_phage_S1249

TaxID: 683735

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: rep: MW735835.1__QTH80463.1__PA10_00265__00263__D2-53
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icaA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.62 34.0 3.88e-01 90.9% 72.5%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 42.0 2.68e-01 80.0% 89.9%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 2.81e-01 89.1% 55.3%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.39e-01 72.7% 70.3%
1yt5A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.50 36.0 2.86e-01 80.0% 84.6%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 2.99e-01 94.5% 50.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738814 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.55 46.0 2.87e-01 92.7% 54.4%
3726808 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.54 39.0 2.75e-01 76.4% 42.2%
3223228 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 40.0 2.55e-01 87.3% 37.0%
3711143 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 2.69e-01 94.5% 68.8%
3979431 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 40.0 2.93e-01 81.8% 58.0%
3834208 2004.5.1.3 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.52 42.0 2.77e-01 89.1% 31.2%
3977545 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.52 38.0 2.34e-01 81.8% 44.7%
4620061 4043.1.1.1 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 0.52 39.0 2.99e-01 78.2% 45.2%
3815874 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.51 38.0 2.54e-01 78.2% 44.8%
3389289 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 40.0 2.50e-01 87.3% 86.3%
3480783 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 37.0 2.32e-01 81.8% 84.2%
D2 medium residues 58-123
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.67 49.0 3.29e-01 80.3% 21.3%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.62 41.0 2.68e-01 86.4% 16.9%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 45.0 3.26e-01 84.8% 98.2%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 36.0 2.82e-01 72.7% 80.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.73 54.0 4.12e-01 78.8% 36.7%
3175971 109.37.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Anion channel SLAC1-related › Anion channel SLAC1-related › SLAC1 0.68 48.0 2.92e-01 74.2% 36.1%
3408042 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 53.0 3.30e-01 86.4% 54.7%
3395192 603.2.1.12 ↗ alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.65 57.0 3.56e-01 97.0% 57.5%
3691819 5050.1.1.14 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 0.61 52.0 3.57e-01 93.9% 52.2%
3949778 2007.1.6.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Bac_GDH_CD 0.54 46.0 3.29e-01 93.9% 45.6%