Back to structures

GU060500.1__ACY39907.1__Ardmore_25__00024

Bact-Vir

GU060500.1__ACY39907.1__Ardmore_25__00024

Identity

Accession:
GU060500 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-115
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04545.23 best Sigma70_r4 25.7 9.10e-06 70.0% 82.0%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 60.0 5.78e-01 70.0% 62.1%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.89 59.0 6.14e-01 71.7% 73.2%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 59.0 6.81e-01 81.7% 95.6%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 59.0 6.13e-01 75.0% 78.2%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.84 59.0 4.76e-01 76.7% 40.4%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 56.0 6.00e-01 70.0% 80.4%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.83 58.0 4.83e-01 73.3% 45.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.81 67.0 5.19e-01 91.7% 42.9%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.80 56.0 3.58e-01 73.3% 22.3%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.79 53.0 5.50e-01 70.0% 75.0%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.76 53.0 4.53e-01 73.3% 46.9%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.73 53.0 3.68e-01 76.7% 30.9%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 56.0 5.18e-01 85.0% 69.3%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 50.0 4.73e-01 73.3% 65.7%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.77e-01 70.0% 67.7%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.71 49.0 3.53e-01 73.3% 33.0%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.33e-01 96.7% 98.9%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 46.0 4.99e-01 73.3% 82.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 50.0 4.90e-01 80.0% 70.8%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.50e-01 75.0% 59.7%
8amzO01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 51.0 3.20e-01 80.0% 15.9%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.78e-01 80.0% 67.2%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 58.0 4.30e-01 93.3% 100.0%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 5.06e-01 76.7% 100.0%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.02e-01 81.7% 41.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 3.65e-01 71.7% 41.1%
2ip2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.98e-01 90.0% 98.8%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 55.0 5.57e-01 91.7% 93.3%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.43e-01 73.3% 66.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 3.64e-01 71.7% 44.2%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 5.11e-01 100.0% 94.2%
4e70A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.74e-01 100.0% 94.1%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 50.0 3.63e-01 85.0% 48.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 3.66e-01 81.7% 60.9%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 4.13e-01 71.7% 66.7%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.67e-01 93.3% 95.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.18e-01 81.7% 97.9%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 42.0 4.63e-01 70.0% 98.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.80e-01 70.0% 66.3%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.78e-01 96.7% 98.8%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.06e-01 85.0% 92.5%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 47.0 3.29e-01 85.0% 49.3%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.15e-01 80.0% 95.8%
3bcgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 50.0 3.47e-01 100.0% 86.5%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.52e-01 88.3% 44.2%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.88e-01 78.3% 100.0%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.54e-01 73.3% 100.0%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.96e-01 90.0% 88.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.35e-01 75.0% 97.3%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 37.0 3.26e-01 80.0% 54.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018585 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.95 61.0 6.45e-01 70.0% 72.7%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 62.0 7.28e-01 75.0% 91.1%
3879118 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.94 60.0 6.35e-01 70.0% 72.7%
3565285 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.93 60.0 5.84e-01 70.0% 61.5%
2792505 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.93 65.0 6.75e-01 73.3% 78.9%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.92 60.0 6.01e-01 70.0% 66.7%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 75.0 7.82e-01 85.0% 92.7%
4957415 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.92 59.0 5.98e-01 70.0% 66.7%
3278040 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 62.0 6.23e-01 70.0% 70.0%
4334657 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.91 59.0 6.81e-01 70.0% 88.9%
4198219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 59.0 6.81e-01 70.0% 88.9%
3589359 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.91 59.0 7.18e-01 70.0% 100.0%
3210747 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.91 59.0 6.77e-01 70.0% 88.9%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.91 69.0 7.28e-01 81.7% 87.3%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.91 65.0 5.98e-01 76.7% 60.0%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.91 64.0 6.95e-01 73.3% 88.0%
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 59.0 6.41e-01 70.0% 80.0%
3942514 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.90 61.0 6.67e-01 80.0% 84.0%
3204806 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 58.0 6.60e-01 70.0% 88.9%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 59.0 5.75e-01 70.0% 63.1%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.88 57.0 6.48e-01 70.0% 88.9%
5006645 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.86 57.0 5.75e-01 70.0% 68.3%
3589184 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 59.0 5.42e-01 71.7% 82.7%
4970998 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.85 62.0 5.14e-01 78.3% 46.0%
3587644 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.84 58.0 5.86e-01 75.0% 71.7%
4952294 101.1.2.870 alpha arrays › HTH › HTH › winged helix domain › GerE 0.84 60.0 6.28e-01 85.0% 81.8%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 56.0 6.04e-01 70.0% 84.0%
5050152 101.1.3.35 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_5 0.83 58.0 6.31e-01 76.7% 88.0%
3945880 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.82 60.0 6.30e-01 81.7% 83.6%
3590546 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 55.0 5.84e-01 75.0% 77.8%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 60.0 6.47e-01 86.7% 92.0%
5060563 101.1.1.544 alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.81 62.0 5.92e-01 85.0% 70.0%
3988724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 58.0 5.83e-01 75.0% 75.0%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 59.0 5.03e-01 78.3% 49.5%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.79 62.0 6.46e-01 85.0% 89.1%
3603739 101.1.1.498 alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 0.76 64.0 4.06e-01 98.3% 43.4%
3986842 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 60.0 5.71e-01 85.0% 94.3%
4008959 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 60.0 6.22e-01 90.0% 96.4%
5004841 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.66e-01 85.0% 76.9%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.73 62.0 6.28e-01 98.3% 91.7%
4971705 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 4.55e-01 73.3% 57.3%
5009839 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.71 49.0 3.70e-01 71.7% 35.0%
4486944 7565.1.1.0 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like 0.71 60.0 4.10e-01 88.3% 30.6%
5051680 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 53.0 4.91e-01 85.0% 71.2%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 55.0 3.44e-01 85.0% 57.0%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.68 55.0 4.49e-01 86.7% 61.9%
3942922 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.67 59.0 5.47e-01 100.0% 78.7%
3933366 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.67 57.0 5.41e-01 91.7% 84.3%
1159643 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.66 60.0 5.70e-01 100.0% 97.2%
3290159 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 52.0 4.36e-01 98.3% 77.3%
4139052 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 34.0 3.27e-01 71.7% 81.3%