Back to structures

GU071095.1__ADO97415.1__SSM2_073__00071

Bact-Vir

GU071095.1__ADO97415.1__SSM2_073__00071

Identity

Accession:
GU071095 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-50
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k5cA00 3.10.20.830 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bifunctional heparan sulphate n-deacetylase/n-sulphotransferase 0.77 64.0 4.93e-01 97.3% 68.2%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.75 63.0 5.62e-01 100.0% 78.6%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.75 60.0 5.75e-01 100.0% 91.5%
6rxpA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.73 59.0 4.44e-01 100.0% 36.8%
1qxfA00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.73 59.0 5.28e-01 100.0% 75.9%
2xzm600 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.71 59.0 4.71e-01 100.0% 57.5%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 47.0 3.73e-01 100.0% 37.3%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 55.0 5.24e-01 100.0% 93.3%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 54.0 4.33e-01 100.0% 56.8%
7kggC01 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.65 54.0 4.21e-01 100.0% 88.8%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 53.0 3.12e-01 100.0% 10.7%
1m2gA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.62 47.0 3.80e-01 100.0% 38.7%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 48.0 3.35e-01 94.6% 39.3%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.61 51.0 3.84e-01 100.0% 42.4%
5v6rA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 44.0 3.42e-01 100.0% 82.6%
2lxwA00 6.10.250.1730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 38.0 3.40e-01 81.1% 45.5%
2vycA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 41.0 2.65e-01 100.0% 15.8%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 47.0 3.76e-01 100.0% 68.8%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.55 39.0 3.98e-01 100.0% 81.6%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.55 37.0 2.33e-01 70.3% 83.9%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 37.0 3.56e-01 78.4% 71.2%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 45.0 3.39e-01 100.0% 70.8%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.30e-01 100.0% 60.0%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 41.0 3.36e-01 97.3% 65.5%
1g5aA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 44.0 3.60e-01 100.0% 78.4%
6n29B01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.52 35.0 3.25e-01 70.3% 73.6%
ECOD (89)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963432 4076.2.1.7 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF5817 0.87 74.0 5.71e-01 100.0% 44.7%
4947213 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.86 74.0 6.48e-01 100.0% 65.5%
3739700 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 63.0 6.70e-01 83.8% 100.0%
5002125 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.85 73.0 6.30e-01 100.0% 63.3%
3587862 2484.1.1.211 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.83 72.0 4.46e-01 97.3% 20.5%
4969798 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.83 70.0 6.18e-01 100.0% 65.5%
5029687 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 69.0 6.53e-01 97.3% 95.6%
4945444 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 67.0 6.80e-01 94.6% 97.1%
5034126 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.82 70.0 6.00e-01 100.0% 60.0%
5051266 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.82 70.0 4.26e-01 97.3% 18.2%
5030549 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.82 68.0 6.08e-01 100.0% 65.5%
4978165 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.82 69.0 4.31e-01 97.3% 20.5%
4979574 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.82 69.0 4.44e-01 97.3% 24.1%
4991529 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.82 69.0 5.96e-01 100.0% 60.0%
3881976 375.1.1.142 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › VCIP135_N 0.82 70.0 5.72e-01 100.0% 55.7%
4015648 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 63.0 6.60e-01 89.2% 97.0%
3380132 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.81 64.0 6.37e-01 91.9% 85.0%
3638416 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.81 69.0 6.13e-01 100.0% 69.1%
4950325 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.81 67.0 5.21e-01 100.0% 42.4%
3741002 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.81 64.0 6.51e-01 89.2% 94.3%
3784601 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.81 64.0 6.15e-01 94.6% 84.4%
5041477 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.80 65.0 5.68e-01 100.0% 60.0%
4979486 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.80 69.0 4.44e-01 100.0% 24.0%
3899324 376.1.6.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.80 66.0 5.03e-01 97.3% 44.4%
3678606 375.1.1.212 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_2 0.79 61.0 6.27e-01 91.9% 94.3%
4979347 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.79 67.0 5.43e-01 100.0% 51.4%
3437513 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.78 66.0 5.52e-01 97.3% 75.4%
4981108 375.1.1.331 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 0.78 65.0 6.16e-01 100.0% 80.0%
4008953 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 58.0 5.98e-01 100.0% 88.6%
3786601 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.78 63.0 6.39e-01 91.9% 97.1%
3878932 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.77 63.0 5.52e-01 97.3% 61.7%
3893608 376.1.6.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.77 64.0 5.35e-01 97.3% 54.4%
3995440 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.77 62.0 6.37e-01 91.9% 97.1%
4962880 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.77 66.0 4.02e-01 97.3% 18.2%
4263982 375.1.1.302 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.77 64.0 5.77e-01 100.0% 67.3%
3903614 375.1.3.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.77 65.0 5.48e-01 100.0% 56.9%
4475754 4076.2.1.5 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP 0.77 64.0 5.45e-01 100.0% 56.9%
3213738 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.77 62.0 6.33e-01 91.9% 97.1%
5017725 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.76 62.0 3.94e-01 97.3% 20.5%
3909223 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.76 63.0 5.39e-01 100.0% 64.6%
4019034 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.76 57.0 5.60e-01 100.0% 77.5%
5066735 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 62.0 5.69e-01 91.9% 68.0%
4024048 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.76 57.0 5.28e-01 100.0% 64.6%
3922469 604.1.1.200 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Ima1_N 0.76 63.0 5.53e-01 94.6% 67.3%
3862499 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.76 63.0 5.53e-01 94.6% 67.3%
3179128 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.75 63.0 6.25e-01 100.0% 95.0%
3486337 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 61.0 5.43e-01 94.6% 67.3%
3484821 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 52.0 4.36e-01 75.7% 70.8%
3274032 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.74 61.0 5.81e-01 94.6% 82.2%
5060491 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 57.0 4.12e-01 97.3% 28.3%
5040368 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 57.0 5.77e-01 89.2% 94.3%
3905524 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.74 61.0 4.73e-01 100.0% 71.1%
5067854 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.74 60.0 4.15e-01 94.6% 46.2%
3629733 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.74 61.0 5.39e-01 94.6% 67.3%
3251948 375.1.3.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.74 61.0 5.30e-01 100.0% 60.0%
3718984 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.73 63.0 5.23e-01 100.0% 60.0%
3506203 375.1.1.202 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.72 56.0 5.70e-01 100.0% 94.3%
3855533 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.72 58.0 4.73e-01 100.0% 52.5%
4111189 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 55.0 4.85e-01 91.9% 55.0%
3671234 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.72 55.0 5.59e-01 91.9% 94.3%
4853382 375.1.1.138 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › IBR_2 0.72 58.0 5.02e-01 97.3% 58.7%
3656347 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 57.0 5.86e-01 91.9% 97.1%
5036396 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 55.0 5.51e-01 91.9% 87.2%
3271858 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.71 57.0 4.90e-01 97.3% 61.5%
4926870 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.08e-01 78.4% 97.5%
3040112 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.71 54.0 4.91e-01 100.0% 62.0%
5027043 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.71 59.0 5.62e-01 100.0% 97.8%
3303263 376.1.6.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › zf-LSD1 0.71 58.0 5.70e-01 97.3% 97.5%
3498209 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 4.69e-01 91.9% 54.7%
3206604 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 51.0 5.25e-01 100.0% 88.6%
3266250 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.70 56.0 4.98e-01 97.3% 65.0%
3620613 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 5.38e-01 100.0% 82.2%
4992102 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 53.0 5.37e-01 100.0% 91.4%
5071248 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.69 56.0 3.57e-01 97.3% 20.0%
5039411 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.69 55.0 4.82e-01 100.0% 70.3%
5071927 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 51.0 4.51e-01 83.8% 65.5%
3612071 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 52.0 4.99e-01 91.9% 73.3%
3999619 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 49.0 4.56e-01 83.8% 60.0%
4666101 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 53.0 5.01e-01 100.0% 73.3%
3592749 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 52.0 5.03e-01 91.9% 75.6%
4322207 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 5.44e-01 100.0% 100.0%
5034313 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.91e-01 91.9% 94.3%
5070290 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 45.0 3.29e-01 100.0% 26.4%
4979649 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.59 43.0 2.60e-01 100.0% 9.2%
394809 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.59 42.0 3.43e-01 97.3% 40.3%
3581246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.22e-01 91.9% 79.0%
4103847 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.53 38.0 3.19e-01 100.0% 36.8%
3251327 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 3.56e-01 91.9% 67.3%
3626657 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 35.0 2.69e-01 73.0% 67.3%