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GU071095.1__ADO97427.1__SSM2_085__00083
Bact-VirGU071095.1__ADO97427.1__SSM2_085__00083
Identity
- Accession:
- GU071095 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nilusvirus›
Synechococcus_phage_S-SM2
TaxID: 444860
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-32
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.78 | 59.0 | 4.22e-01 | 93.8% | 26.8% |
| 2qh9A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.71 | 54.0 | 3.49e-01 | 96.9% | 23.6% |
| 3qpbF00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.69 | 58.0 | 3.45e-01 | 100.0% | 49.4% |
| 1kkhA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.68 | 54.0 | 3.60e-01 | 96.9% | 22.9% |
| 4na1B02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.65 | 44.0 | 3.15e-01 | 90.6% | 22.1% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 44.0 | 3.60e-01 | 84.4% | 37.7% |
| 1oksA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 52.0 | 4.44e-01 | 96.9% | 86.8% |
| 6edhA00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.60 | 49.0 | 2.91e-01 | 100.0% | 44.5% |
| 2vycA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 51.0 | 2.99e-01 | 100.0% | 72.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943192 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.77 | 67.0 | 4.09e-01 | 100.0% | 27.5% |
| 3237331 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.77 | 53.0 | 4.60e-01 | 87.5% | 46.0% |
| 3174814 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.73 | 54.0 | 3.38e-01 | 96.9% | 14.2% |
| 3416865 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.70 | 57.0 | 5.43e-01 | 96.9% | 82.5% |
| 3220199 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.69 | 58.0 | 3.74e-01 | 100.0% | 54.8% |
| 4009368 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.68 | 55.0 | 3.41e-01 | 100.0% | 15.0% |
| 5036110 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.67 | 54.0 | 3.04e-01 | 100.0% | 7.9% |
| 3966259 | 7577.1.1.9 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › OKR_DC_1 | 0.60 | 52.0 | 3.00e-01 | 100.0% | 71.0% |
| 3821814 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.56 | 43.0 | 4.01e-01 | 93.8% | 71.1% |